VU Medicinos fakulteto autoriaus 'Renaldas Augulis' publikacijų sąrašas

2024
1 Stulpinas, Rokas; Morkūnas, Mindaugas; Rasmusson, Allan; Drachneris, Julius; Augulis, Renaldas; Kielaitė-Gulla, Aistė; Strupas, Kęstutis; Laurinavičius, Arvydas. Improving HCC prognostic models after liver resection by AI-extracted tissue fiber framework analytics // Cancers. Basel : MDPI AG. eISSN 2072-6694. 2024, vol. 16, iss. 1, art. no. 106, p. [1-18]. DOI: 10.3390/cancers16010106. [DB: Science Citation Index Expanded (Web of Science)]
2 Žilėnaitė-Petrulaitienė, Dovilė; Rasmusson, Allan; Besusparis, Justinas; Valkiūnienė, Rūta Barbora; Augulis, Renaldas; Laurinavičienė, Aida; Plancoulaine, Benoit; Petkevičius, Linas; Laurinavičius, Arvydas. Intratumoral heterogeneity of Ki67 proliferation index outperforms conventional immunohistochemistry prognostic factors in estrogen receptor-positive HER2-negative breast cancer // Virchows archiv. New York : Springer. ISSN 0945-6317. eISSN 1432-2307. 2024, Early Access, p. [1-12]. DOI: 10.1007/s00428-024-03737-4. [DB: Science Citation Index Expanded (Web of Science), Scopus]
3 Augulis, Renaldas; Rasmusson, Allan; Laurinavičienė, Aida; Jen, Kuang-Yu; Laurinavičius, Arvydas. Computational pathology model to assess acute and chronic transformations of the tubulointerstitial compartment in renal allograft biopsies // Scientific reports. Berlin : Nature Portfolio. eISSN 2045-2322. 2024, vol. 14, iss. 1, art. no. 5345, p. [1-12]. DOI: 10.1038/s41598-024-55936-3. [DB: Science Citation Index Expanded (Web of Science), Scopus]

2022
1 Laurinavičius, Arvydas; Rasmusson, Allan; Nestarenkaitė, Aušrinė; Žilėnaitė, Dovilė; Augulis, Renaldas. Automated tumour-stroma interface zone detection for anti-tumour response assessment by immunogradient indicators. EP3953899A1. 2022-02-16. [1] p. Prieiga per internetą: <https://worldwide.espacenet.com/patent/search?q=pn%3DEP3953899A1>.
2 Acs, Balazs; Leung, Samuel C. Y.; Kidwell, Kelley M.; Arun, Indu; Augulis, Renaldas; Badve, Sunil S.; Bai, Yalai; Bane, Anita L.; Bartlett, John M. S.; Bayani, Jane; Bigras, Gilbert; Blank, Annika; Buikema, Henk; Chang, Martin C.; Dietz, Robin L.; Dodson, Andrew; Fineberg, Susan; Focke, Cornelia M.; Gao, Dongxia; Gown, Allen M.; Gutierrez, Carolina; Hartman, Johan; Kos, Zuzana; Lænkholm, Anne-Vibeke; Laurinavičius, Arvydas; Levenson, Richard M.; Mahboubi-Ardakani, Rustin; Mastropasqua, Mauro G.; Nofech-Mozes, Sharon; Osborne, C. Kent; Penault-Llorca, Frédérique M.; Piper, Tammy; Quintayo, Mary Anne; Rau, Tilman T.; Reinhard, Stefan; Robertson, Stephanie; Salgado, Roberto; Sugie, Tomoharu; van der Vegt, Bert; Viale, Giuseppe; Zabaglo, Lila A.; Hayes, Daniel F.; Dowsett, Mitch; Nielsen, Torsten O.; Rimm, David L.; McShane, Lisa M.; Nielsen, Torsten; Leung, Samuel; Borgquist, Signe; Chan, Angela; Denkert, Carsten; Ehinger, Anna; Ellis, Matthew; Flowers, Margaret; Galderisi, Chad; Gholap, Abhi; Hartman, Douglas J.; Hugh, Judith C.; Jadhav, Anagha; Kornaga, Elizabeth N.; Kreipe, Hans; Levenson, Richard; Mastropasqua, Mauro; Moriya, Takuya; Pan, Hongchao; Pantanowitz, Liron; Neri, Ernesta Paola; Polley, Mei-Yin; Ruan, Jason; Sakatani, Takashi; Shepherd, Lois; Smith, Ian; Sparano, Joseph; Spears, Melanie; Srinivasan, Malini; Starczynski, Jane; Todd, Austin; Virk, Shakeel; Wang, Yihong; Yang, Hua; Zhang, Zhiwei; Zlobec, Inti. Systematically higher Ki67 scores on core biopsy samples compared to corresponding resection specimen in breast cancer: a multi-operator and multi-institutional study // Modern pathology. London : Springer Science and Business Media LLC. ISSN 0893-3952. eISSN 1530-0285. 2022, vol. 35, p. 1362-1369. DOI: 10.1038/s41379-022-01104-9. [DB: Science Citation Index Expanded (Web of Science), Scopus, Embase, MEDLINE] [IF: 7.500; AIF: 3.500; Q1 (2022 InCities JCR SCIE)]
3 Mirsanaye, Kamdin; Uribe Castaño, Leonardo; Kamaliddin, Yasmeen; Golaraei, Ahmad; Augulis, Renaldas; Kontenis, Lukas; Done, Susan J; Žurauskas, Edvardas; Stambolic, Vuk; Wilson, Brian C; Barzda, Virginijus. Machine learning-enabled cancer diagnostics with widefield polarimetric second-harmonic generation microscopy // Scientific reports. Berlin : Nature Portfolio. eISSN 2045-2322. 2022, vol. 12, iss. 1, art. no. 10290, p. [1-14]. DOI: 10.1038/s41598-022-13623-1. [DB: Science Citation Index Expanded (Web of Science), Scopus]

2021
1 Radžiuvienė, Gedmantė; Rasmusson, Allan; Augulis, Renaldas; Grinevičiūtė, Rūta Barbora; Žilėnaitė, Dovilė; Laurinavičienė, Aida; Ostapenko, Valerijus; Laurinavičius, Arvydas. Intratumoral heterogeneity and immune response indicators to predict overall survival in a retrospective study of HER2-borderline (IHC 2+) breast cancer patients // Frontiers in oncology. Lausanne : Frontiers Research Foundation. ISSN 2234-943X. 2021, vol. 11, art. no. 774088, p. [1-15]. DOI: 10.3389/fonc.2021.774088. [DB: Science Citation Index Expanded (Web of Science), Scopus] [IF: 5.738; AIF: 6.352; Q2 (2021 InCities JCR SCIE)]

2020
1 Laurinavičius, Arvydas (autorius, išradimo); Rasmusson, Allan (autorius, išradimo); Nestarenkaitė, Aušrinė (autorius, išradimo); Žilėnaitė, Dovilė (autorius, išradimo); Augulis, Renaldas (autorius, išradimo). Automatizuotas naviko ir stromos sąsajos zonos nustatymas, skirtas naviko atsako įvertinimui naudojant imunogradientinius indikatorius / išradėjai: Arvydas Laurinavičius, Allan Rasmusson, Aušrinė Nestarenkaitė, Dovilė Žilėnaitė, Renaldas Augulis; pareiškėjas: Vilniaus universitetas. LT 6784 B. 2020-12-10. 35 p. Prieiga per internetą: <https://search.vpb.lt/pdb/patent/dossier/2019%20509>. [DB: Lietuvos Respublikos patentų duomenų bazė]
2 Laurinavičius, Arvydas (autorius, išradimo); Rasmusson, Allan (autorius, išradimo); Nestarenkaitė, Aušrinė (autorius, išradimo); Žilėnaitė, Dovilė (autorius, išradimo); Augulis, Renaldas (autorius, išradimo). Automatizuotas naviko ir stromos sąsajos zonos nustatymas, skirtas naviko atsako įvertinimui naudojant imunogradientinius indikatorius / išradėjai: Arvydas Laurinavičius, Allan Rasmusson, Aušrinė Nestarenkaitė, Dovilė Žilėnaitė, Renaldas Augulis; pareiškėjas: Vilniaus universitetas. LT 2019509 A. 2020-10-26. 33 p. Prieiga per internetą: <https://search.vpb.lt/pdb/patent/dossier/2019%20509>.
3 Laurinavičius, Arvydas (autorius, išradimo); Rasmusson, Allan (autorius, išradimo); Nestarenkaitė, Aušrinė (autorius, išradimo); Žilėnaitė, Dovilė (autorius, išradimo); Augulis, Renaldas (autorius, išradimo). Automated tumour-stroma interface zone detection for anti-tumour response assessment by immunogradient indicators / Inventors: Arvydas Laurinavičius, Allan Rasmusson, Aušrinė Nestarenkaitė, Dovilė Žilėnaitė, Renaldas Augulis; applicant: Vilniaus universitetas. WO2020208571A1. 2020-10-15. 36 p. Prieiga per internetą: <https://worldwide.espacenet.com/patent/search/family/070779804/publication/WO2020208571A1?q=pct%2Fib2020%2F053396>. [DB: Espacenet]
4 Augulis, Renaldas (tyrėjas); Rasmusson, Allan (tyrėjas); Laurinavičius, Arvydas (tyrėjas); Žilėnaitė, Dovilė (tyrėjas); Nestarenkaitė, Aušrinė (tyrėjas); Laurinavičienė, Aida (tyrėjas); Ostapenko, Valerijus (tyrėjas); Poškus, Tomas (tyrėjas). Immunogradient = imunogradientas. Vilnius, 2020. 5 failai. Prieiga per internetą: <https://midas.lt/public-app.html#/research/overview?resourceId=156402&uuid=790c85e2-f6e5-4db3-9d55-69bb6527b6a3>.
5 Rasmusson, Allan; Žilėnaitė, Dovilė; Nestarenkaitė, Aušrinė; Augulis, Renaldas; Laurinavičienė, Aida; Ostapenko, Valerijus; Poškus, Tomas; Laurinavičius, Arvydas. Immunogradient indicators for antitumor response assessment by automated tumor-stroma interface zone detection // American journal of pathology. New York : Elsevier Science Inc. ISSN 0002-9440. eISSN 1525-2191. 2020, vol. 190, no. 6, p. 1309-1322. DOI: 10.1016/j.ajpath.2020.01.018. [DB: Scopus, MEDLINE, Science Citation Index Expanded (Web of Science)] [IF: 4.307; AIF: 3.725; Q2 (2020 InCities JCR SCIE)]
6 Žilėnaitė, Dovilė; Rasmusson, Allan; Augulis, Renaldas; Besusparis, Justinas; Laurinavičienė, Aida; Plancoulaine, Benoit; Ostapenko, Valerijus; Laurinavičius, Arvydas. Independent prognostic value of intratumoral heterogeneity and immune response features by automated digital immunohistochemistry analysis in early hormone receptor-positive breast carcinoma // Frontiers in oncology. Lausanne : Frontiers Research Foundation. ISSN 2234-943X. 2020, vol. 10, art. no. 950, p. [1-13]. DOI: 10.3389/fonc.2020.00950. [DB: Science Citation Index Expanded (Web of Science), Scopus] [IF: 6.244; AIF: 6.244; Q2 (2020 InCities JCR SCIE)]
7 Acs, Balazs; Leung, Samuel C. Y.; Kidwell, Kelley M.; Arun, Indu; Augulis, Renaldas; Badve, Sunil S.; Bai, Yalai; Bane, Anita L.; Bartlett, John M. S.; Bayani, Jane; Bigras, Gilbert; Blank, Annika; Borgquist, Signe; Buikema, Henk; Chang, Martin C.; Dietz, Robin L.; Dodson, Andrew; Ehinger, Anna; Fineberg, Susan; Focke, Cornelia M.; Gao, Dongxia; Gown, Allen M.; Gutierrez, Carolina; Hartman, Johan; Hugh, Judith C.; Kos, Zuzana; Laenkholm, Anne-Vibeke; Laurinavičius, Arvydas; Levenson, Richard M.; Mahboubi-Ardakani, Rustin; Mastropasqua, Mauro G.; Moriya, Takuya; Nofech-Mozes, Sharon; Osborne, C. Kent; Pantanowitz, Liron; Penault-Llorca, Frederique M.; Piper, Tammy; Quintayo, Mary Anne; Rau, Tilman T.; Reinhard, Stefan; Robertson, Stephanie; Sakatani, Takashi; Salgado, Roberto; Spears, Melanie; Tarczynski, Jane S.; Sugie, Tomoharu; van der Vegt, Bert; Viale, Giuseppe; Virk, Shakeel; Zabaglo, Lila A.; Hayes, Daniel F.; Dowsett, Mitch; Nielsen, Torsten O.; Rimm, David L. Analytical validation and prognostic potential of an automated digital scoring protocol for Ki67: An International Ki67 Working Group study // Cancer research. Philadelphia : American Association for Cancer Research. ISSN 0008-5472. eISSN 1538-7445. 2020, vol. 80, no. 4, suppl., abstract no. P5-02-01, p. [1]. DOI: 10.1158/1538-7445.SABCS19-P5-02-01. [DB: Science Citation Index Expanded (Web of Science)] [IF: 12.701; AIF: 6.244; Q1 (2020 InCities JCR SCIE)]

2019
1 Šileikytė, Auksė; Jakubkevičius, Valentinas; Besusparis, Justinas (temos vadovas); Augulis, Renaldas (temos vadovas); Laurinavičius, Arvydas (temos vadovas). The use of an artifitial inteligence based image analysis algorythm for histological renal segmentation // 14th Białystok international medical congress for young scientists, May 17-18th 2019 : book of abstracts. Białystok : Medical University of Bialystok, 2019. ISBN 9788395207501. p. 75. Prieiga per internetą: <https://bimc.umb.edu.pl/wp-content/uploads/2019/05/14th-BIMC-Book-of-Abstracts.pdf> [žiūrėta 2023-03-23].
2 Joseph, Jesuchristopher; Roudier, Martine P; Narayanan, Priya Lakshmi; Augulis, Renaldas; Ros, Vidalba Rocher; Pritchard, Alison; Gerrard, Joe; Laurinavičius, Arvydas; Harrington, Elizabeth A; Barrett, J Carl; Howat, William J. Proliferation Tumour Marker Network (PTM-NET) for the identification of tumour region in Ki67 stained breast cancer whole slide images // Scientific reports. London : Nature Publishing Group. eISSN 2045-2322. 2019, vol. 9, art. no. 12845, p. [1-12]. DOI: 10.1038/s41598-019-49139-4. [DB: MEDLINE, Scopus, Science Citation Index Expanded (Web of Science)]
3 Nestarenkaitė, Aušrinė; Rasmusson, Allan; Žilėnaitė, Dovilė; Augulis, Renaldas; Laurinavičienė, Aida; Ostapenko, Valerijus; Poškus, Tomas; Laurinavičius, Arvydas. Prognostic value of CD8 immunogradient indicators in tumour-stroma interface zone of colorectal cancer // Virchows Archiv. Heidelberg : Springer. ISSN 0945-6317. eISSN 1432-2307. 2019, vol. 475, suppl. 1, p. 206-207. DOI: 10.1007/s00428-019-02631-8. [DB: Scopus, Science Citation Index Expanded (Web of Science)] [IF: 2.906; AIF: 2.557; Q2 (2019 InCities JCR SCIE)]
4 Žilėnaitė, Dovilė; Rasmusson, Allan; Nestarenkaitė, Aušrinė; Augulis, Renaldas; Laurinavičienė, Aida; Ostapenko, Valerijus; Poškus, Tomas; Laurinavičius, Arvydas. The immunogradient of CD8+cell density in the tumour-stroma interface zone predicts overall survival of patients with hormone receptor-positive invasive ductal breast carcinoma // Virchows Archiv. Heidelberg : Springer. ISSN 0945-6317. eISSN 1432-2307. 2019, vol. 475, suppl. 1, p. 80-81. DOI: 10.1007/s00428-019-02631-8. [DB: Scopus, Science Citation Index Expanded (Web of Science)] [IF: 2.906; AIF: 2.557; Q2 (2019 InCities JCR SCIE)]

2018
1 Šileikytė, Auksė; Jakubkevičius, Valentinas; Laurinavičius, Arvydas (temos vadovas); Besusparis, Justinas (temos vadovas); Augulis, Renaldas (temos vadovas). Giliojo mokymo dirbtinio intelekto metodais pagrįsto skaitmeninės analizės algoritmo pritaikomumas automatizuotam inksto histologinių strūktūrų segmentavimui // Studentų mokslinės veiklos 70 konferencija, Vilnius, 2018 m. gegužės 18-25 d. : pranešimų tezės. Vilnius : Vilniaus universiteto leidykla, 2018. ISBN 9786094599378. eISBN 9786094599361. p. 209-210. Prieiga per internetą: <https://www.mf.vu.lt/images/lb00001_2018_vu_mf_sm_lxx_konferencija.pdf> [žiūrėta 2019-05-06].

2017
1 Baltrūnienė, Vaida; Bironaitė, Daiva; Kažukauskienė, Ieva; Bogomolovas, Julijus; Vitkus, Dalius; Ručinskas, Kęstutis; Žurauskas, Edvardas; Augulis, Renaldas; Grabauskienė, Virginija. The role of serum adiponectin for outcome prediction in patients with dilated cardiomyopathy and advanced heart failure // BioMed research international : Hindawi. ISSN 2314-6133. eISSN 2314-6141. 2017, Vol. 2017, Article ID 3818292, [p. 1-13]. DOI: 10.1155/2017/3818292. [DB: Science Citation Index Expanded (Web of Science), Scopus, Academic Search Premier, BIOSIS Previews, Biotechnology Research Abstracts, Embase, MEDLINE] [IF: 2.583; AIF: 3.298; Q2 (2017 InCities JCR SCIE)]
2 Radžiuvienė, Gedmantė; Rasmusson, Allan; Augulis, Renaldas; Leščiūtė-Krilavičienė, Daiva; Laurinavičienė, Aida; Clim, Eduard; Laurinavičius, Arvydas. Automated image analysis of HER2 fluorescence in situ hybridization to refine definitions of genetic heterogeneity in breast cancer tissue // BioMed research international. London : Hindawi Publishing Corporation. ISSN 2314-6133. eISSN 2314-6141. 2017, art. no. 2321916, [11 p.]. DOI: 10.1155/2017/2321916. [DB: MEDLINE, Embase, Biotechnology Research Abstracts, BIOSIS Previews, Academic Search Premier, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 2.583; AIF: 3.298; Q2 (2017 InCities JCR SCIE)]

2016
1 Besusparis, Justinas; Plancoulaine, Benoit; Rasmusson, Allan; Augulis, Renaldas; Green, Andrew R.; Ellis, Ian O.; Laurinavičienė, Aida; Herlin, Paulette; Laurinavičius, Arvydas. Impact of tissue sampling on accuracy of Ki67 immunohistochemistry evaluation in breast cancer // Diagnostic pathology. London : BioMed Central. ISSN 1746-1596. 2016, Vol. 11, Art. No. 82. DOI: 10.1186/s13000-016-0525-z. [DB: Embase, Scopus, PubMed, MEDLINE, Science Citation Index Expanded (Web of Science)] [IF: 2.025; AIF: 2.585; Q2 (2016 InCities JCR SCIE)]
2 Laurinavičius, Arvydas; Plancoulaine, Benoit; Rasmusson, Allan; Besusparis, Justinas; Augulis, Renaldas; Meškauskas, Raimundas; Herlin, Paulette; Laurinavičienė, Aida; Abdelhadi Muftah, Abir A.; Miligy, Islam; Aleskandarany, Mohammed; Rakha, Emad A.; Green, Andrew R.; Ellis, Ian O. Bimodality of intratumor Ki67 expression is an independent prognostic factor of overall survival in patients with invasive breast carcinoma // Virchows Archiv. Heidelberg : Springer Science+Business Media. ISSN 0945-6317. eISSN 1432-2307. 2016, Vol. 468, Iss. 4, p. 493-502. DOI: 10.1007/s00428-016-1907-z. [DB: Current Contents, Embase, Scopus, Chemical abstracts, MEDLINE, PubMed, Science Citation Index Expanded (Web of Science)] [IF: 2.848; AIF: 2.585; Q2 (2016 InCities JCR SCIE)]

2000
1 Tamulevičius, S.; Augulis, L.; Augulis, R.; Zabarskas, V.; Valeika, A.; Bataitis, V. Speklų interferometrija: mikrodeformacijų matavimas in situ // Lietuviškas spalvinis kineskopas: konstrukcija, technologija, kokybė : 9-osios AB "Ekranas" mokslinės-techninės konferencijos medžiaga, Panevėžys 1999 m. gruodžio 16 d. Vilnius : Mokslo aidai, 2000. ISBN 9986479622. p. 39-55.