VU Gyvybės mokslų centro autoriaus 'Mindaugas Zaremba' publikacijų sąrašas

2024
1 Manakova, Elena; Golovinas, Edvardas; Pocevičiūtė, Reda; Sasnauskas, Giedrius; Šilanskas, Arūnas; Rutkauskas, Danielis; Jankunec, Marija; Zagorskaitė, Evelina; Jurgelaitis, Edvinas; Grybauskas, Algirdas; Venclovas, Česlovas; Zaremba, Mindaugas. The missing part: the Archaeoglobus fulgidus Argonaute forms a functional heterodimer with an N-L1-L2 domain protein // Nucleic acids research. Oxford : Oxford University Press (OUP). ISSN 0305-1048. eISSN 1362-4962. 2024, vol. 52, iss. 5, p. 2530-2545. DOI: 10.1093/nar/gkad1241. [DB: Science Citation Index Expanded (Web of Science), Scopus, Embase]
2 Tamulaitienė, Giedrė; Sabonis, Džiugas; Sasnauskas, Giedrius; Rukšėnaitė, Audronė; Šilanskas, Arūnas; Avraham, Carmel; Ofir, Gal; Sorek, Rotem; Zaremba, Mindaugas; Šikšnys, Virginijus. Activation of Thoeris antiviral system via SIR2 effector filament assembly // Nature. Berlin : Nature Research. ISSN 0028-0836. eISSN 1476-4687. 2024, vol. 627, iss. 8003, p. 431-436. DOI: 10.1038/s41586-024-07092-x. [DB: Science Citation Index Expanded (Web of Science), Scopus]

2023
1 Manakova, Elena; Golovinas, Edvardas; Pocevičiūtė, Reda; Sasnauskas, Giedrius; Grybauskas, Algirdas; Gražulis, Saulius; Zaremba, Mindaugas. Structural basis for sequence-specific recognition of guide and target strands by the Archaeoglobus fulgidus Argonaute protein // Scientific reports. Berlin : Nature research. ISSN 2045-2322. 2023, vol. 13, art. no. 6123, p. [1-10]. DOI: 10.1038/s41598-023-32600-w. [DB: Science Citation Index Expanded (Web of Science), Scopus] [IF: 3.800; AIF: 5.700; Q1 (2023 InCities JCR SCIE)]
2 Kopūstas, Aurimas; Mazerimas, M.; Jurevičiūtė, M.; Alsamsam, Mohammad Nour; Paksaitė, J.; Budvytytė, Rima; Zaremba, Mindaugas; Tutkus, Marijonas. Characterization and improvement of modified glass surface functional and passivating properties for efficient single-molecule fluorescence imaging // 12th single molecule localization microscopy symposium (SMLMS 2023), 28 - 30 August 2023, Vienna, Austria. Vienna. 2023, P041, p. 97. Prieiga per internetą: <https://smlms.org/> [žiūrėta 2023-09-11].
3 Ivanovaitė, Šarūnė; Paksaitė, Justė; Kopūstas, Aurimas; Karzaitė, Giedrė; Rutkauskas, Danielis; Šilanskas, Arūnas; Sasnauskas, Giedrius; Zaremba, Mindaugas; Jones, Stephen K.; Tutkus, Marijonas. smFRET detection of cis and trans DNA interactions by the BfiI restriction endonuclease // Journal of physical chemistry B. Washington : American Chemical Society (ACS). ISSN 1520-6106. eISSN 1520-5207. 2023, vol. 127, no. 29, p. 6470-6478. DOI: 10.1021/acs.jpcb.3c03269.s001. [DB: Science Citation Index Expanded (Web of Science), Scopus] [IF: 2.800; AIF: 7.000; Q3 (2023 InCities JCR SCIE)]

2022
1 Tutkus, Marijonas; Kopūstas, Aurimas; Alsamsam, Mohammad Nour; Paksaitė, Justė; Jurevičiūtė, Meda; Ašmontas, Simonas Vytautas; Karvelis, Tautvydas; Zaremba, Mindaugas. Super-resolution microscopy and the soft DNA curtains: high-throughput SM method for protein-DNA interaction studies // Joint international conference “Functional materials and nanotechnologies“ and "Nanotechnology and innovation in the Baltic sea region“, FM&NT – NIBS 2022, Riga, Latvia, July 3 - 6, 2022: book of abstracts / edited by L. Grīnberga, A. Šarakovskis, G. Kunakova. Riga : University of Latvia, 2022, OR-10. ISBN 9789934236457. p. 100. Prieiga per internetą: <https://fmnt-nibs.lu.lv/speakers-agenda> [žiūrėta 2022-09-09].
2 Kupčinskaitė, Eglė; Tutkus, Marijonas; Kopūstas, Aurimas; Ašmontas, Simonas Vytautas; Jankunec, Marija; Zaremba, Mindaugas; Tamulaitienė, Giedrė; Šinkūnas, Tomas. Disarming of type I-F CRISPR-Cas surveillance complex by anti-CRISPR proteins AcrIF6 and AcrIF9 // Scientific reports : Springer Science and Business Media LLC. ISSN 2045-2322. eISSN 2045-2322. 2022, vol. 12, art. no. 15548, p. 1-14. DOI: 10.1038/s41598-022-19797-y. [DB: Scopus, Science Citation Index Expanded (Web of Science)] [IF: 4.600; AIF: 7.200; Q2 (2022 InCities JCR SCIE)]
3 Kopūstas, Aurimas; Zaremba, Mindaugas; Tutkus, Marijonas. DNA flow-stretch assays for studies of protein-DNA interactions at the single-molecule level // Applied nano. Basel : MDPI AG. eISSN 2673-3501. 2022, vol. 3, iss. 1, p. 16-41. DOI: 10.3390/applnano3010002. [DB: DOAJ]
4 Zaremba, Mindaugas; Dakinevičienė, Donata; Golovinas, Edvardas; Zagorskaitė, Evelina; Stankūnas, Edvinas; Lopatina, Anna; Sorek, Rotem; Manakova, Elena; Rukšėnaitė, Audronė; Šilanskas, Arūnas; Ašmontas, Simonas Vytautas; Grybauskas, Algirdas; Tylenytė, Ugnė; Jurgelaitis, Edvinas; Grigaitis, Rokas; Timinskas, Kęstutis; Venclovas, Česlovas; Šikšnys, Virginijus. Short prokaryotic Argonautes provide defence against incoming mobile genetic elements through NAD+ depletion // Nature microbiology. Berlin : Nature Portfolio. eISSN 2058-5276. 2022, vol. 7, iss. 11, p. 1857-1869. DOI: 10.1038/s41564-022-01239-0. [DB: Science Citation Index Expanded (Web of Science), Scopus]
5 Deschamps, Stephane (autorius, išradimo); Šikšnys, Virginijus (autorius, išradimo); Young, Joshua K. (autorius, išradimo); Zaremba, Mindaugas (autorius, išradimo). Methods for the identification and characterization of double-strand break sites and compositions and uses thereof. EP3790993A4. 2022-02-16. 2 p. Prieiga per internetą: <https://patents.google.com/patent/EP3790993A4/>.
6 Garb, Jeremy; Lopatina, Anna; Bernheim, Aude; Zaremba, Mindaugas; Šikšnys, Virginijus; Melamed, Sarah; Leavitt, Azita; Millman, Adi; Amitai, Gil; Sorek, Rotem. Multiple phage resistance systems inhibit infection via SIR2-dependent NAD+ depletion // Nature microbiology. Berlin : Nature Portfolio. eISSN 2058-5276. 2022, vol. 7, iss. 11, p. 1849-1856. DOI: 10.1038/s41564-022-01207-8. [DB: Science Citation Index Expanded (Web of Science), Scopus]
7 Sabonis, Džiugas; Šilanskas, Arūnas; Ofir, G.; Sorek, R.; Šikšnys, Virginijus; Zaremba, Mindaugas; Tamulaitienė, Giedrė. Crystal structures of TIR-domain proteins from Thoeris bacterial antiviral system // Febs Open Bio: Supplement: The Biochemistry Global Summit, 25th IUBMB Congress, 46th FEBS Congress, 15th PABMB Congress, July 9–14, 2022, Lisbon, Portugal. Hoboken : Wiley. ISSN 2211-5463. 2022, vol. 12, suppl. 1, art. no. P-02.1-021, p. 162-163. DOI: 10.1002/2211-5463.13440. [DB: Science Citation Index Expanded (Web of Science)] [IF: 2.600; AIF: 5.900; Q4 (2022 InCities JCR SCIE)]

2021
1 Golovinas, Edvardas; Rutkauskas, Danielis; Manakova, Elena; Jankunec, Marija; Šilanskas, Arūnas; Sasnauskas, Giedrius; Zaremba, Mindaugas. Prokaryotic Argonaute from Archaeoglobus fulgidus interacts with DNA as a homodimer // Scientific reports. London : Nature. ISSN 2045-2322. 2021, vol. 11, art. no. 4518, p. 1-14. DOI: 10.1038/s41598-021-83889-4. [DB: Science Citation Index Expanded (Web of Science), Scopus, MEDLINE, DOAJ] [IF: 4.997; AIF: 7.694; Q2 (2021 InCities JCR SCIE)]
2 Deschamps, Stephane (autorius, išradimo); Šikšnys, Virginijus (autorius, išradimo); Young, Joshua K. (autorius, išradimo); Zaremba, Mindaugas (autorius, išradimo). Methods for the identification and characterization of double-strand break sites and compositions and uses thereof : European patent application. EP3790993A1. 2021-03-17. 35 p. Prieiga per internetą: <https://patents.google.com/patent/EP3790993A1/en>.
3 Deschamps, Stephane (autorius, išradimo); Šikšnys, Virginijus (autorius, išradimo); Young, Joshua K. (autorius, išradimo); Zaremba, Mindaugas (autorius, išradimo). Methods for the identification and characterization of double-strand break sites and compositions and uses thereof. US20210147909A1. 2021-05-20. 57 p.
4 Kopūstas, Aurimas; Rakickas, Tomas; Paksaitė, Justė; Pocevičiūtė, Ernesta; Karvelis, Tautvydas; Zaremba, Mindaugas; Manakova, Elena; Tutkus, Marijonas. Soft DNA Curtains: high-throughput SM biophysics method to investigate protein-DNA interaction // 13th EBSA European biophysics congress, Vienna (Austria), July 24–28, 2021. Vienna. 2021, P-354, p. 190.
5 Kopūstas, Aurimas; Rakickas, Tomas; Paksaitė, Justė; Pocevičiūtė, Ernesta; Karvelis, Tautvydas; Zaremba, Mindaugas; Manakova, Elena; Tutkus, Marijonas. Soft DNA Curtains platform for single-molecule level DNA-protein interaction studies // 13 th EBSA European biophysics congress, Vienna (Austria), July 24–28, 2021. Vienna. 2021, P-355, p. 191.
6 Kopūstas, Aurimas; Karvelis, Tautvydas; Manakova, Elena; Paksaitė, Justė; Pocevičiūtė, Ernesta; Rakickas, Tomas; Zaremba, Mindaugas; Tutkus, Marijonas. Soft DNA Curtains: High-throughput SM biophysics method to investigate the binding of proteins to DNA // EMBO | EMBL Symposium : Seeing is believing: imaging the molecular processes of life: 5-8 October 2021, virtual conference. 2021, p. 1-3. Prieiga per internetą: <https://www.embl.org/about/info/course-and-conference-office/events/ees21-10/> [žiūrėta 2022-09-27].
7 Rakickas, Tomas; Paksaitė, Justė; Pocevičiūtė, Ernesta; Karvelis, Tautvydas; Zaremba, Mindaugas; Manakova, Elena; Tutkus, Marijonas; Kopūstas, Aurimas. Soft DNA Curtains fabrication and application to protein binding studies // EMBO | EMBL Symposium : Seeing is believing: imaging the molecular processes of life: 5-8 October 2021, virtual conference. 2021, p. 1-3. Prieiga per internetą: <https://www.embl.org/about/info/course-and-conference-office/events/ees21-10/> [žiūrėta 2022-09-27].
8 Kopūstas, Aurimas; Ivanovaitė, Šarūnė; Rakickas, Tomas; Pocevičiūtė, Ernesta; Paksaitė, Justė; Karvelis, Tautvydas; Zaremba, Mindaugas; Manakova, Elena; Tutkus, Marijonas. Oriented soft DNA curtains for single-molecule imaging // Langmuir. Washington : American Chemical Society. ISSN 0743-7463. eISSN 1520-5827. 2021, vol. 37, iss. 11, p. 3428-3437. DOI: 10.1021/acs.langmuir.1c00066. [DB: Science Citation Index Expanded (Web of Science), Scopus] [IF: 4.331; AIF: 7.312; Q2 (2021 InCities JCR SCIE)]

2019
1 Tutkus, Marijonas; Rakickas, Tomas; Kopūstas, Aurimas; Ivanovaitė, Šarūnė; Venckus, Oskaras; Navikas, Vytautas; Zaremba, Mindaugas; Manakova, Elena; Valiokas, Ramūnas. Protein lift-off micro-contact printing for fabrication of fixed DNA Curtains platform // Single-molecule sensors and nano systems international conference – S3IC 2019, April 3-5 2019, Munich, Germany. 2019, p. 1.
2 Tutkus, Marijonas; Rakickas, Tomas; Kopūstas, Aurimas; Ivanovaitė, Šarūnė; Venckus, Oskaras; Navikas, Vytautas; Zaremba, Mindaugas; Manakova, Elena; Valiokas, Ramūnas. Fixed DNA molecule arrays for high-throughput single DNA-protein interaction studies // Langmuir. Washington : American Chemical Society. ISSN 0743-7463. eISSN 1520-5827. 2019, vol. 35, iss. 17, p. 5921-5930. DOI: 10.1021/acs.langmuir.8b03424. [DB: Zetoc (British Library), SwetsWise, Science Citation Index Expanded (Web of Science), Scopus, PubMed] [IF: 3.557; AIF: 5.963; Q2 (2019 InCities JCR SCIE)]
3 Zaremba, Mindaugas; Manakova, Elena; Golovinas, Edvardas; Gražulis, Saulius; Šikšnys, Virginijus. Specificity of the argonaute protein from Archeoglobus fulgidus to the 5‘-end of the guide // COINS 2019 - 14th international conference of life sciences, [February 26-28, 2019, Vilnius, Lithuania] : abstract book. Vilnius : Vilniaus universiteto leidykla. 2019, p. 33. Prieiga per internetą: <https://thecoins.eu/wp-content/uploads/2019/02/Abstract-of-The-COINS-2019.pdf> [žiūrėta 2019-07-11].
4 Tutkus, Marijonas; Rakickas, Tomas; Kopūstas, Aurimas; Ivanovaitė, Šarūnė; Venckus, Oskaras; Zaremba, Mindaugas; Valiokas, Ramūnas; Manakova, Elena. Minkštosios DNR užuolaidos - nanometrinė platforma pavienių DNR ir baltymų sąveikos tyrimams // 43-oji Lietuvos nacionalinė fizikos konferencija, 2019 m. spalio 3-5 d., Kaunas : pranešimų medžiaga. Kaunas : Kauno technologijos universitetas, 2019. eISBN 9786090216385. p. 37. DOI: 10.5755/e01.9786090216385.
5 Young, Joshua; Zastrow-Hayes, Gina; Deschamps, Stéphane; Svitashev, Sergei; Zaremba, Mindaugas; Acharya, Ananta; Paulraj, Sushmitha; Peterson-Burch, Brooke; Schwartz, Chris; Djukanovic, Vesna; Lenderts, Brian; Feigenbutz, Lanie; Wang, Lijuan; Alarcon, Clara; Šikšnys, Virginijus; May, Gregory; Chilcoat, N. Doane; Kumar, Sandeep. CRISPR-Cas9 editing in maize: systematic evaluation of off-target activity and its relevance in crop improvement // Scientific reports. London : Nature Publishing Group. eISSN 2045-2322. 2019, vol. 9, art. no. 6729, p. [1-11]. DOI: 10.1038/s41598-019-43141-6. [DB: MEDLINE, Scopus, Science Citation Index Expanded (Web of Science)]
6 Kumar, Sandeep; Young, Joshua; Zastrow-Hayes, Gina; Deschamps, Stephane; Svitashev, Sergei; Zaremba, Mindaugas; Acharya, Ananta; Paulraj, Sushmitha; Peterson-Burch, Brooke; Schwartz, Chris; Djukanovic, Vesna; Lenderts, Brian; Feigenbutz, Lanie; Wang, Lijuan; Alarcon, Clara; Šikšnys, Virginijus; May, Gregory; Chilcoat, Doane. Systematic evaluation of CRISPR-Cas9 specificity and its relevance in crop improvement // In Vitro cellular & developmental biology-animal: 2019 In Vitro Biology Meeting Abstract Issue. New York : Springer. ISSN 1071-2690. eISSN 1543-706X. 2019, vol. 55, suppl. 1, art. no. PS-9, p. S4-S5. DOI: 10.1007/s11626-019-00353-4. [DB: Science Citation Index Expanded (Web of Science)] [IF: 1.665; AIF: 5.010; Q4 (2019 InCities JCR SCIE)]

2018
1 Tutkus, Marijonas; Ivanovaitė, Šarūnė; Venckus, Oskaras; Kopūstas, Aurimas; Karzaitė, Giedrė; Rutkauskas, Danielis; Sasnauskas, Giedrius; Zaremba, Mindaugas. Single-molecule fluorescence and FRET microscopy for DNA – protein interaction studies // QuEBS 2018: Workshop on quantum effects in biological systems, July 10-13, 2018 , Vilnius, Lithuania,. Vilnius. 2018, p. 1.
2 Tutkus, Marijonas; Karzaitė, Giedrė; Ivanovaitė, Šarūnė; Rutkauskas, Danielis; Zaremba, Mindaugas. Fluorescence microscopy studies of DNA and DNA restriction enzymes interactions at the single molecule level // Vita Scientia : international conference, 3rd January 2018, Vilnius : conference book. Vilnius : Vita Scientia. ISSN 2538-791X. 2018, p. 37-38. Prieiga per internetą: <http://www.vitascientia.lt/book> [žiūrėta 2018-04-27].
3 Toliušis, Paulius; Tamulaitienė, Giedrė; Grigaitis, Rokas; Tuminauskaitė, Donata; Šilanskas, Arūnas; Manakova, Elena; Venclovas, Česlovas; Szczelkun, Mark D.; Šikšnys, Virginijus; Zaremba, Mindaugas. The H-subunit of the restriction endonuclease CglI contains a prototype DEAD-Z1 helicase-like motor // Vita Scientia : international conference, 3rd January 2018, Vilnius : conference book. Vilnius : Vita Scientia. ISSN 2538-791X. 2018, p. 51. Prieiga per internetą: <http://eia.libis.lt/item.php?item=vita_scientia:_confe_2018_00_00.pdf&type=date> [žiūrėta 2018-04-27].
4 Tuminauskaitė, Donata; Tamulaitienė, Giedrė; Šilanskas, Arūnas; Zaremba, Mindaugas; Toliušis, Paulius. Crystallographic studies of atypical restriction endonuclease CglI H-protein // Vita Scientia : international conference, 3rd January 2018, Vilnius : conference book. Vilnius : Vita Scientia. ISSN 2538-791X. 2018, p. 55-56. Prieiga per internetą: <http://www.vitascientia.lt/book> [žiūrėta 2018-04-27].
5 Tutkus, Marijonas; Karzaitė, Giedrė; Ivanovaitė, Šarūnė; Rutkauskas, Danielis; Zaremba, Mindaugas. Fluorescence microscopy studies of DNA and DNA restriction enzymes interactions at the single molecule level // Open readings 2018: 61st international conference for students of physics and natural sciences, March 20-23, 2018, Vilnius, Lithuania : programme and abstracts. Vilnius : [s.n.]. 2018, p. 47. Prieiga per internetą: <http://www.openreadings.eu/wp-content/uploads/2018/03/book.pdf> [žiūrėta 2018-07-05].
6 Tutkus, Marijonas; Rakickas, Tomas; Ivanovaitė, Šarūnė; Venckus, Oskaras; Kopūstas, Aurimas; Kostiuk, Georgij; Zaremba, Mindaugas; Valiokas, Ramūnas; Manakova, Elena. DNA curtains – nanoscale platform for studying of DNAprotein interactions at the single-molecule level // 16th International conference on Advanced properties and processes in optoelectronics materials and systems (Apropos 16) : October 10-12, 2018, Vilnius, Lithuania : book of abstracts. Vilnius : Center for physical sciences and technology, 2018. ISBN 9786099551159. p. 37. Prieiga per internetą: <http://apropos.ftmc.lt/> [žiūrėta 2018-12-03].
7 Toliušis, Paulius; Tamulaitienė, Giedrė; Grigaitis, Rokas; Tuminauskaitė, Donata; Šilanskas, Arūnas; Manakova, Elena; Venclovas, Česlovas; Szczelkun, Mark D.; Šikšnys, Virginijus; Zaremba, Mindaugas. The H-subunit of the restriction endonuclease CglI contains a prototype DEAD-Z1 helicase-like motor // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2018, vol. 46, no 5, p. 2560-2572. DOI: 10.1093/nar/gky107. [DB: Scopus, Science Citation Index Expanded (Web of Science)] [IF: 11.147; AIF: 4.417; Q1 (2018 InCities JCR SCIE)]
8 Tutkus, Marijonas; Rakickas, Tomas; Kopūstas, Aurimas; Ivanovaitė, Šarūnė; Venckus, Oskaras; Navikas, Vytautas; Zaremba, Mindaugas; Manakova, Elena; Valiokas, Ramūnas. Nanoscale platform for DNA-protein interaction studies at the single-molecule level // Baltic biophysics conference, 4th-5th October, 2018, Kaunas : abstract book. Kaunas. 2018, p. 13-14.

2017
1 Tamulaitienė, Giedrė; Jovaišaitė, Virginija; Tamulaitis, Gintautas; Songailienė, Inga; Manakova, Elena; Zaremba, Mindaugas; Gražulis, Saulius; Shuang-yong, Xu; Šikšnys, Virginijus. Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNA // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2017, Vol. 45, no 6, p. 3547-3558. DOI: 10.1093/nar/gkw1310. [DB: Science Citation Index, Scopus, Embase, Biobase, Chemical abstracts, CABI Abstracts Databases] [IF: 11.561; AIF: 4.281; Q1 (2017 InCities JCR SCIE)]
2 Toliušis, Paulius; Zaremba, Mindaugas; Šilanskas, Arūnas; Szczelkun, Mark D.; Šikšnys, Virginijus. CgII cleaves DNA using a mechanism distinct from other ATP-dependent restriction endonucleases // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2017, Vol. 45, Iss. 14, p. 8435-8447. DOI: 10.1093/nar/gkx580. [DB: CABI Abstracts Databases, Chemical abstracts, Biobase, Embase, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 11.561; AIF: 4.281; Q1 (2017 InCities JCR SCIE)]

2015
1 Tamulaitis, Gintautas; Rutkauskas, Marius; Zaremba, Mindaugas; Gražulis, Saulius; Tamulaitienė, Giedrė; Šikšnys, Virginijus. Functional significance of protein assemblies predicted by the crystal structure of the restriction endonuclease BsaWI // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2015, vol. 43, no. 16, p. 8100-8110. DOI: 10.1093/nar/gkv768. [DB: Science Citation Index Expanded (Web of Science), CAB, MEDLINE] [IF: 9.202; AIF: 4.093; Q1 (2015 InCities JCR SCIE)]
2 Zaremba, Mindaugas; Šikšnys, Virginijus. An engineered SS bridge blocks the conformational change required for the nuclease activity of BfiI // Biochemistry. Washington : American Chemical Society. ISSN 0006-2960. 2015, Vol. 54, no 34, p. 5340-5347. DOI: 10.1021/acs.biochem.5b00437. [DB: MEDLINE, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 2.876; AIF: 4.093; Q2 (2015 InCities JCR SCIE)]
3 Tutkus, Marijonas; Rutkauskas, Danielis; Sasnauskas, Giedrius; Tamulaitis, Gintautas; Zaremba, Mindaugas; Šikšnys, Virginijus. Restriktazės Ecl18kI indukuoto DNR kilpojimo dinamikos studijos pavienių molekulių lygyje naudojant TIRF FRET mikroskopiją // 41-oji Lietuvos nacionalinė fizikos konferencija : programa ir pranešimų tezės, Vilnius, 2015 m. birželio 17-19 d. Vilnius : Valstybinis Fizinių ir technologijos mokslų centras, 2015. ISBN 9786099551128. p. 57.

2014
1 Golovenko, Dmitrij; Manakova, Elena; Zakrys, Linas; Zaremba, Mindaugas; Sasnauskas, Giedrius; Gražulis, Saulius; Šikšnys, Virginijus. Structural insight into the specificity of the B3 DNA-binding domains provided by the co-crystal structure of the C-terminal fragment of BfiI restriction enzyme // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. 2014, vol. 42, no 6, p. 4113-4122. DOI: 10.1093/nar/gkt1368. [DB: VINITI, MEDLINE, ProQuest (nenaudotinas), Elsevier (nenaudotinas), Ebsco (nenaudotinas), CSA (nenaudotinas), CAB Abstracts, Science Citation Index Expanded (Web of Science)] [IF: 9.112; AIF: 4.149; Q1 (2014 InCities JCR SCIE)]
2 Rutkauskas, Danielis; Petkelytė, Milda; Naujalis, Paulius; Sasnauskas, Giedrius; Tamulaitis, Gintautas; Zaremba, Mindaugas; Šikšnys, Virginijus. Restriction enzyme Ecl18kI-Induced DNA looping dynamics by single-molecule FRET // The journal of physical chemistry B. Washington : American Chemical Society. ISSN 1520-6106. 2014, vol. 118, iss. 29, p. 8575-8582. DOI: 10.1021/jp504546v. [DB: Scopus, CAS (nenaudotinas), Chemical abstracts, MEDLINE, INSPEC, Science Citation Index Expanded (Web of Science)] [IF: 3.302; AIF: 4.438; Q2 (2014 InCities JCR SCIE)]
3 Toliušis, Paulius; Zaremba, Mindaugas; Šilanskas, Arūnas; Šikšnys, Virginijus. ATP-dependent endonuclease of a stress-sensitive restriction-modification system from Corynebacterium glutamicum // 50th anniversary of FEBS : Abstracts book of The XIIIth International Conference of Lithuanian Biochemical Society, June 18-20, 2014. Vilnius. 2014, p. 31. Prieiga per internetą: <http://www.elib.grsu.by/katalog/481236pdf.pdf?d=true> [žiūrėta 2016-05-13].
4 Grigaitis, Rokas; Zaremba, Mindaugas; Šilanskas, Arūnas; Šikšnys, Virginijus. Characterisation of protein domains of atypical restriction-modification systems // 50th anniversary of FEBS : Abstracts book of The XIIIth International Conference of Lithuanian Biochemical Society, June 18-20, 2014. Vilnius. 2014, p. 59.
5 Tamulaitienė, Giedrė; Šilanskas, Arūnas; Gražulis, Saulius; Zaremba, Mindaugas; Šikšnys, Virginijus. Crystal structure of the R-protein of the multisubunit ATP-dependent restriction endonuclease NgoAVII // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. 2014, vol. 42, no 22, p. 14022-14030. DOI: 10.1093/nar/gku1237. [DB: Science Citation Index Expanded (Web of Science), CAB Abstracts, CSA (nenaudotinas), Ebsco (nenaudotinas), ProQuest (nenaudotinas), MEDLINE, VINITI] [IF: 9.112; AIF: 4.149; Q1 (2014 InCities JCR SCIE)]
6 Zaremba, Mindaugas; Toliušis, Paulius; Grigaitis, Rokas; Manakova, Elena; Šilanskas, Arūnas; Tamulaitienė, Giedrė; Szczelkun, Mark. D.; Šikšnys, Virginijus. DNA cleavage by CgII and NgoAVII requires interaction between N- and R-proteins and extensive nucleotide hydrolysis // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. 2014, Vol. 42, no 22, p. 13887-13896. DOI: 10.1093/nar/gku1236. [DB: VINITI, MEDLINE, ProQuest (nenaudotinas), Elsevier (nenaudotinas), Ebsco (nenaudotinas), CSA (nenaudotinas), CAB Abstracts, Science Citation Index Expanded (Web of Science)] [IF: 9.112; AIF: 4.149; Q1 (2014 InCities JCR SCIE)]

2012
1 Šilanskas, Arūnas; Zaremba, Mindaugas; Sasnauskas, Giedrius; Šikšnys, Virginijus. Catalytic activity control of restriction endonuclease-triplex forming oligonucleotide conjugates // Bioconjugate chemistry. Washington : American Chemical Society. ISSN 1043-1802. 2012, vol. 23, iss. 2, p. 203-211. DOI: 10.1021/bc200480m. [DB: MEDLINE, Chemical abstracts, BIOSIS Previews, Science Citation Index Expanded (Web of Science)] [IF: 4.580; AIF: 3.933; Q1 (2012 InCities JCR SCIE)]
2 Manakova, Elena; Gražulis, Saulius; Zaremba, Mindaugas; Tamulaitienė, Giedrė; Golovenko, Dmitrij; Šikšnys, Virginijus. Structural mechanisms of the degenerate sequence recognition by Bse634I restriction endonuclease // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. 2012, Vol. 40, no 14, p. 6741-6751. DOI: 10.1093/nar/gks300. [DB: Science Citation Index Expanded (Web of Science), CAB Abstracts, MEDLINE, VINITI] [IF: 8.278; AIF: 4.273; Q1 (2012 InCities JCR SCIE)]
3 Zaremba, Mindaugas; Sasnauskas, Giedrius; Šikšnys, Virginijus. The link between restriction endonuclease fidelity and oligomeric state:a study with Bse634I // FEBS letters. Amsterdam : Elsevier BV. ISSN 0014-5793. 2012, vol. 586, no 19, p. 3324-3329. DOI: 10.1016/j.febslet.2012.07.009. [DB: Embase, BIOSIS Previews, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 3.582; AIF: 4.466; Q1 (2012 InCities JCR SCIE)]