VU Gyvybės mokslų centro autoriaus 'Česlovas Venclovas' publikacijų sąrašas

2025
1 Santos, Joana A.; Timinskas, Kęstutis; Ramudzuli, Atondaho A.; Lamers, Meindert H.; Venclovas, Česlovas; Warner, Digby F.; Gessner, Sophia J. The RecA-NT homology motif in ImuB mediates the interaction with ImuA′, which is essential for DNA damage–induced mutagenesis // Journal of biological chemistry : Elsevier Inc on behalf of American Society for Biochemistry and Molecular Biology. eISSN 1083-351X. 2025, vol. 301, iss. 2, art. no. 108108, p. [1-11]. DOI: 10.1016/j.jbc.2024.108108. [DB: Science Citation Index Expanded (Web of Science), Scopus]
2 Timinskas, Kęstutis; Timinskas, Albertas; Venclovas, Česlovas. Common themes in architecture and interactions of prokaryotic PolB2 and Pol V mutasomes inferred from in silico studies // Computational and structural biotechnology journal. Amsterdam : Elsevier B.V. eISSN 2001-0370. 2025, vol. 27, p. 401-410. DOI: 10.1016/j.csbj.2025.01.010. [DB: Science Citation Index Expanded (Web of Science), Scopus]

2024
1 Manakova, Elena; Golovinas, Edvardas; Pocevičiūtė, Reda; Sasnauskas, Giedrius; Šilanskas, Arūnas; Rutkauskas, Danielis; Jankunec, Marija; Zagorskaitė, Evelina; Jurgelaitis, Edvinas; Grybauskas, Algirdas; Venclovas, Česlovas; Zaremba, Mindaugas. The missing part: the Archaeoglobus fulgidus Argonaute forms a functional heterodimer with an N-L1-L2 domain protein // Nucleic acids research. Oxford : Oxford University Press (OUP). ISSN 0305-1048. eISSN 1362-4962. 2024, vol. 52, iss. 5, p. 2530-2545. DOI: 10.1093/nar/gkad1241. [DB: Science Citation Index Expanded (Web of Science), Scopus, Embase]
2 Dapkūnas, Justas; Timinskas, Albertas; Olechnovič, Kliment; Tomkuvienė, Miglė; Venclovas, Česlovas. PPI3D: a web server for searching, analyzing and modeling protein-protein, protein-peptide and protein-nucleic acid interactions // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2024, vol. 52, iss. W1, art. no. gkae278, p. W264-W271. DOI: 10.1093/nar/gkae278. [DB: Science Citation Index Expanded (Web of Science)]

2023
1 Sasnauskas, Giedrius; Tamulaitienė, Giedrė; Druteika, Gytis; Carabias, Arturo; Šilanskas, Arūnas; Kazlauskas, Darius; Venclovas, Česlovas; Montoya, Guillermo; Karvelis, Tautvydas; Šikšnys, Virginijus. TnpB structure reveals minimal functional core of Cas12 nuclease family // Nature. Berlin : Nature Portfolio. ISSN 0028-0836. eISSN 1476-4687. 2023, vol. 616, no. 7956, p. 384-389. DOI: 10.1038/s41586-023-05826-x. [DB: Science Citation Index Expanded (Web of Science), Scopus] [IF: 50.500; AIF: 5.700; Q1 (2023 InCities JCR SCIE)]
2 Olechnovič, Kliment; Venclovas, Česlovas. VoroIF-GNN: Voronoi tessellation-derived protein-protein interface assessment using a graph neural network // Proteins: Special Issue:CASP15: Critical Assessment of methods for Structure Prediction, 15th round. Hoboken : Wiley. ISSN 0887-3585. eISSN 1097-0134. 2023, vol. 91, iss. 12, p. 1879-1888. DOI: 10.1002/prot.26554. [DB: Science Citation Index Expanded (Web of Science), Scopus] [IF: 3.200; AIF: 4.400; Q2 (2023 InCities JCR SCIE)]
3 Olechnovič, Kliment; Valančauskas, Lukas; Dapkūnas, Justas; Venclovas, Česlovas. Prediction of protein assemblies by structure sampling followed by interface-focused scoring // Proteins - structure function and bioinformatics: Special issue:CASP15: Critical Assessment of methods for Structure Prediction, 15th round. Hoboken : Wiley. eISSN 1097-0134. 2023, vol. 91, iss. 12, p. 1724-1733. DOI: 10.1002/prot.26569. [DB: Science Citation Index Expanded (Web of Science)]
4 Gessner, Sophia; Martin, Zela Alexandria-Mae; Reiche, Michael A.; Santos, Joana A.; Dinkele, Ryan; Ramudzuli, Atondaho; Dhar, Neeraj; de Wet, Timothy J.; Anoosheh, Saber; Lang, Dirk M.; Aaron, Jesse; Chew, Teng-Leong; Herrmann, Jennifer; Müller, Rolf; McKinney, John D.; Woodgate, Roger; Mizrahi, Valerie; Venclovas, Česlovas; Lamers, Meindert H.; Warner, Digby F. Investigating the composition and recruitment of the mycobacterial ImuA′– ImuB–DnaE2 mutasome // eLife. Cambridge : eLife Sciences Publications Ltd. eISSN 2050-084X. 2023, vol. 12, p. [1-23]. DOI: 10.7554/eLife.75628. [DB: Science Citation Index Expanded (Web of Science), Scopus]
5 Lensink, Marc F.; Brysbaert, Guillaume; Raouraoua, Nessim; Bates, Paul A.; Giulini, Marco; Honorato, Rodrigo V.; van Noort, Charlotte; Teixeira, Joao M. C.; Bonvin, Alexandre M. J. J.; Kong, Ren; Shi, Hang; Lu, Xufeng; Chang, Shan; Liu, Jian; Guo, Zhiye; Chen, Xiao; Morehead, Alex; Roy, Raj S.; Wu, Tianqi; Giri, Nabin; Quadir, Farhan; Chen, Chen; Cheng, Jianlin; Del Carpio, Carlos A.; Ichiishi, Eichiro; Rodriguez-Lumbreras, Luis A.; Fernandez-Recio, Juan; Harmalkar, Ameya; Chu, Lee-Shin; Canner, Sam; Smanta, Rituparna; Gray, Jeffrey J.; Li, Hao; Lin, Peicong; He, Jiahua; Tao, Huanyu; Huang, Sheng-You; Roel-Touris, Jorge; Jimenez-Garcia, Brian; Christoffer, Charles W.; Jain, Anika J.; Kagaya, Yuki; Kannan, Harini; Nakamura, Tsukasa; Terashi, Genki; Verburgt, Jacob C.; Zhang, Yuanyuan; Zhang, Zicong; Fujuta, Hayato; Sekijima, Masakazu; Kihara, Daisuke; Khan, Omeir; Kotelnikov, Sergei; Ghani, Usman; Padhorny, Dzmitry; Beglov, Dmitri; Vajda, Sandor; Kozakov, Dima; Negi, Surendra S.; Ricciardelli, Tiziana; Barradas-Bautista, Didier; Cao, Zhen; Chawla, Mohit; Cavallo, Luigi; Oliva, Romina; Yin, Rui; Cheung, Melyssa; Guest, Johnathan D.; Lee, Jessica; Pierce, Brian G.; Shor, Ben; Cohen, Tomer; Halfon, Matan; Schneidman-Duhovny, Dina; Zhu, Shaowen; Yin, Rujie; Sun, Yuanfei; Shen, Yang; Maszota-Zieleniak, Martyna; Bojarski, Krzysztof K.; Lubecka, Emilia A.; Marcisz, Mateusz; Danielsson, Annemarie; Dziadek, Lukasz; Gaardlos, Margrethe; Gieldon, Artur; Liwo, Adam; Samsonov, Sergey A.; Slusarz, Rafal; Zieba, Karolina; Sieradzan, Adam K.; Czaplewski, Cezary; Kobayashi, Shinpei; Miyakawa, Yuta; Kiyota, Yasuomi; Takeda-Shitaka, Mayuko; Olechnovič, Kliment; Valančauskas, Lukas; Dapkūnas, Justas; Venclovas, Česlovas; Wallner, Bjorn; Yang, Lin; Hou, Chengyu; He, Xiaodong; Guo, Shuai; Jiang, Shenda; Ma, Xiaoliang; Duan, Rui; Qui, Liming; Xu, Xianjin; Zou, Xiaoqin; Velankar, Sameer; Wodak, Shoshana J. Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment // Proteins: structure, function and bioinformatics: Special Issue: CASP15: Critical Assessment of methods for Structure Prediction, 15th round. Hoboken : John Wiley and Sons Inc. ISSN 0887-3585. eISSN 1097-0134. 2023, vol. 91, iss. 12, p. 1658-1683. DOI: 10.1002/prot.26609. [DB: Science Citation Index Expanded (Web of Science), Scopus] [IF: 3.200; AIF: 4.400; Q2 (2023 InCities JCR SCIE)]
6 Gromiha, M. Michael; Kundrotas, Petras; Marti, Marcelo Adrian; Venclovas, Česlovas; Li, Minghui. Editorial: Protein recognition and associated diseases // Frontiers in bioinformatics. Lausanne : Frontiers Media SA. eISSN 2673-7647. 2023, vol. 3, art. no. 1215141, p. [1-2]. DOI: 10.3389/fbinf.2023.1215141. [DB: Emerging Sources Citation Index (Web of Science), Scopus]
7 Schweke, Hugo; Xu, Qifang; Tauriello, Gerardo; Pantolini, Lorenzo; Schwede, Torsten; Cazals, Frédéric; Lhéritier, Alix; Fernandez-Recio, Juan; Rodríguez-Lumbreras, Luis Angel; Schueler-Furman, Ora; Varga, Julia K.; Jiménez-García, Brian; Réau, Manon F.; Bonvin, Alexandre M. J. J.; Savojardo, Castrense; Martelli, Pier-Luigi; Casadio, Rita; Tubiana, Jérôme; Wolfson, Haim J.; Oliva, Romina; Barradas-Bautista, Didier; Ricciardelli, Tiziana; Cavallo, Luigi; Venclovas, Česlovas; Olechnovič, Kliment; Guerois, Raphael; Andreani, Jessica; Martin, Juliette; Wang, Xiao; Terashi, Genki; Sarkar, Daipayan; Christoffer, Charles; Aderinwale, Tunde; Verburgt, Jacob; Kihara, Daisuke; Marchand, Anthony; Correia, Bruno E.; Duan, Rui; Qiu, Liming; Xu, Xianjin; Zhang, Shuang; Zou, Xiaoqin; Dey, Sucharita; Dunbrack, Roland L.; Levy, Emmanuel D.; Wodak, Shoshana J. Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study // Proteomics. Hoboken : Wiley. ISSN 1615-9853. eISSN 1615-9861. 2023, vol. 23, iss. 17, art. no. 2200323, p. [1-21]. DOI: 10.1002/pmic.202200323. [DB: Science Citation Index Expanded (Web of Science), Scopus] [IF: 3.400; AIF: 4.400; Q2 (2023 InCities JCR SCIE)]
8 Mogila, Irmantas; Tamulaitienė, Giedrė; Keda, Konstanty; Timinskas, Albertas; Rukšėnaitė, Audronė; Sasnauskas, Giedrius; Venclovas, Česlovas; Šikšnys, Virginijus; Tamulaitis, Gintautas. Ribosomal stalk-captured CARF-RelE ribonuclease inhibits translation following CRISPR signaling // Science. New York : American Association for the Advancement of Science. ISSN 0036-8075. eISSN 1095-9203. 2023, vol. 382, no. 6674, p. 1036-1041. DOI: 10.1126/science.adj2107. [DB: Science Citation Index Expanded (Web of Science), Scopus] [IF: 44.800; AIF: 5.700; Q1 (2023 InCities JCR SCIE)]

2022
1 Zaremba, Mindaugas; Dakinevičienė, Donata; Golovinas, Edvardas; Zagorskaitė, Evelina; Stankūnas, Edvinas; Lopatina, Anna; Sorek, Rotem; Manakova, Elena; Rukšėnaitė, Audronė; Šilanskas, Arūnas; Ašmontas, Simonas Vytautas; Grybauskas, Algirdas; Tylenytė, Ugnė; Jurgelaitis, Edvinas; Grigaitis, Rokas; Timinskas, Kęstutis; Venclovas, Česlovas; Šikšnys, Virginijus. Short prokaryotic Argonautes provide defence against incoming mobile genetic elements through NAD+ depletion // Nature microbiology. Berlin : Nature Portfolio. eISSN 2058-5276. 2022, vol. 7, iss. 11, p. 1857-1869. DOI: 10.1038/s41564-022-01239-0. [DB: Science Citation Index Expanded (Web of Science), Scopus]

2021
1 Igashov, Ilia; Olechnovič, Kliment; Kadukova, Maria; Venclovas, Česlovas; Grudinin, Sergei. VoroCNN: deep convolutional neural network built on 3D Voronoi tessellation of protein structures // Bioinformatics. Oxford : Oxford University Press. ISSN 1367-4803. eISSN 1460-2059. 2021, vol. 37, no. 16, p. 2332-2339. DOI: 10.1093/bioinformatics/btab118. [DB: Science Citation Index Expanded (Web of Science), Scopus, MEDLINE] [IF: 6.931; AIF: 4.849; Q1 (2021 InCities JCR SCIE)]
2 Dapkūnas, Justas; Olechnovič, Kliment; Venclovas, Česlovas. Modeling of protein complexes in CASP14 with emphasis on the interaction interface prediction // Proteins: structure, function, and bioinformatics: Special Issue: CASP14: Critical Assessment of methods of protein Structure Prediction, 14th round. Hoboken : Wiley. ISSN 0887-3585. eISSN 1097-0134. 2021, vol. 89, iss. 12, p. 1834-1843. DOI: 10.1002/prot.26167. [DB: Science Citation Index Expanded (Web of Science), Scopus, BIOSIS Previews, MEDLINE, INSPEC] [IF: 4.088; AIF: 5.561; Q2 (2021 InCities JCR SCIE)]
3 Lensink, Marc F; Brysbaert, Guillaume; Mauri, Théo; Nadzirin, Nurul; Velankar, Sameer; Chaleil, Raphael A G; Clarence, Tereza; Bates, Paul A; Kong, Ren; Liu, Bin; Yang, Guangbo; Liu, Ming; Shi, Hang; Lu, Xufeng; Chang, Shan; Roy, Raj S; Quadir, Farhan; Liu, Jian; Cheng, Jianlin; Antoniak, Anna; Czaplewski, Cezary; Giełdoń, Artur; Kogut, Mateusz; Lipska, Agnieszka G; Liwo, Adam; Lubecka, Emilia A; Maszota-Zieleniak, Martyna; Sieradzan, Adam K; Ślusarz, Rafał; Wesołowski, Patryk A; Zięba, Karolina; Del Carpio Muñoz, Carlos A; Ichiishi, Eiichiro; Harmalkar, Ameya; Gray, Jeffrey J; Bonvin, Alexandre M J J; Ambrosetti, Francesco; Vargas Honorato, Rodrigo; Jandova, Zuzana; Jiménez-García, Brian; Koukos, Panagiotis I; Van Keulen, Siri; Van Noort, Charlotte W; Réau, Manon; Roel-Touris, Jorge; Kotelnikov, Sergei; Padhorny, Dzmitry; Porter, Kathryn A; Alekseenko, Andrey; Ignatov, Mikhail; Desta, Israel; Ashizawa, Ryota; Sun, Zhuyezi; Ghani, Usman; Hashemi, Nasser; Vajda, Sandor; Kozakov, Dima; Rosell, Mireia; Rodríguez-Lumbreras, Luis A; Fernandez-Recio, Juan; Karczynska, Agnieszka; Grudinin, Sergei; Yan, Yumeng; Li, Hao; Lin, Peicong; Huang, Sheng-You; Christoffer, Charles; Terashi, Genki; Verburgt, Jacob; Sarkar, Daipayan; Aderinwale, Tunde; Wang, Xiao; Kihara, Daisuke; Nakamura, Tsukasa; Hanazono, Yuya; Gowthaman, Ragul; Guest, Johnathan D; Yin, Rui; Taherzadeh, Ghazaleh; Pierce, Brian G; Barradas-Bautista, Didier; Cao, Zhen; Cavallo, Luigi; Oliva, Romina; Sun, Yuanfei; Zhu, Shaowen; Shen, Yang; Park, Taeyong; Woo, Hyeonuk; Yang, Jinsol; Kwon, Sohee; Won, Jonghun; Seok, Chaok; Kiyota, Yasuomi; Kobayashi, Shinpei; Harada, Yoshiki; Takeda-Shitaka, Mayuko; Kundrotas, Petras J; Singh, Amar; Vakser, Ilya A; Dapkūnas, Justas; Olechnovič, Kliment; Venclovas, Česlovas; Duan, Rui; Qiu, Liming; Xu, Xianjin; Zhang, Shuang; Zou, Xiaoqin; Wodak, Shoshana J. Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment // Proteins: structure, function, and bioinformatics: Special Issue: CASP14: Critical Assessment of methods of protein Structure Prediction, 14th round. Hoboken : Wiley. ISSN 0887-3585. eISSN 1097-0134. 2021, vol. 89, iss. 12, p. 1800-1823. DOI: 10.1002/prot.26222. [DB: Science Citation Index Expanded (Web of Science), Scopus, BIOSIS Previews, MEDLINE, INSPEC] [IF: 4.088; AIF: 5.561; Q2 (2021 InCities JCR SCIE)]
4 Kryshtafovych, Andriy; Moult, John; Billings, Wendy M; Della Corte, Dennis; Fidelis, Krzysztof; Kwon, Sohee; Olechnovič, Kliment; Seok, Chaok; Venclovas, Česlovas; Won, Jonghun. Modeling SARS-CoV-2 proteins in the CASP-commons experiment // Proteins: structure, function, and bioinformatics: Special Issue: CASP14: Critical Assessment of methods of protein Structure Prediction, 14th round. Hoboken : Wiley. ISSN 0887-3585. eISSN 1097-0134. 2021, vol. 89, iss. 12, p. 1987-1996. DOI: 10.1002/prot.26231. [DB: Science Citation Index Expanded (Web of Science), Scopus, PubMed] [IF: 4.088; AIF: 5.561; Q2 (2021 InCities JCR SCIE)]
5 Olechnovič, Kliment; Venclovas, Česlovas. VoroContacts: a tool for the analysis of interatomic contacts in macromolecular structures // Bioinformatics. Oxford : Oxford University Press. ISSN 1367-4803. eISSN 1460-2059. 2021, vol. 37, iss. 24, p. 4873-4875. DOI: 10.1093/bioinformatics/btab448. [DB: Science Citation Index Expanded (Web of Science), Scopus, MEDLINE] [IF: 6.931; AIF: 4.849; Q1 (2021 InCities JCR SCIE)]
6 Karvelis, Tautvydas; Druteika, Gytis; Bigelytė, Greta; Budrė, Karolina; Žedaveinytė, Rimantė; Šilanskas, Arūnas; Kazlauskas, Darius; Venclovas, Česlovas; Šikšnys, Virginijus. Transposon-associated TnpB is a programmable RNA-guided DNA endonuclease // Nature. Berlin : Nature research. ISSN 0028-0836. eISSN 1476-4687. 2021, vol. 599, p. 692-696. DOI: 10.1038/s41586-021-04058-1. [DB: Science Citation Index Expanded (Web of Science), Scopus, Academic Search Premier, MEDLINE, Embase] [IF: 69.504; AIF: 7.694; Q1 (2021 InCities JCR SCIE)]
7 Dapkūnas, Justas; Timinskas, Albertas; Olechnovič, Kliment; Tomkuvienė, Miglė; Venclovas, Česlovas. PPI3D: a computational resource for searching, analysis and modeling protein-protein, protein-peptide and protein-nucleic acid interactions // Protein science: Award Winners and Abstracts of the 35th Anniversary Symposium of The Protein Society, July 7–14, 2021 | Virtual. Hoboken : Wiley. ISSN 0961-8368. eISSN 1469-896X. 2021, vol. 30, suppl. 1, art. no. 507, p. 189. DOI: 10.1002/pro.4191. [DB: Science Citation Index Expanded (Web of Science)] [IF: 6.993; AIF: 6.490; Q1 (2021 InCities JCR SCIE)]
8 Laan, Maris; Kasak, Laura; Timinskas, Kęstutis; Grigorova, Marina; Venclovas, Česlovas; Renaux, Alexandre; Lenaerts, Tom; Punab, Margus. NR5A1 c.991-1G > C splice-site variant causes familial 46,XY partial gonadal dysgenesis with incomplete penetrance // Clinical endocrinology. New York : Wiley. ISSN 0300-0664. eISSN 1365-2265. 2021, vol. 94, iss. 4, p. 656-666. DOI: 10.1111/cen.14381. [DB: Science Citation Index Expanded (Web of Science), Scopus] [IF: 3.523; AIF: 5.717; Q3 (2021 InCities JCR SCIE)]

2020
1 Dapkūnas, Justas; Kairys, Visvaldas; Olechnovič, Kliment; Venclovas, Česlovas. Template-based modeling of diverse protein interactions in CAPRI rounds 38-45 // Proteins: structure, function and bioinformatics. Hoboken : John Wiley and Sons Inc. ISSN 0887-3585. eISSN 1097-0134. 2020, vol. 88, no. 8, p. 939-947. DOI: 10.1002/prot.25845. [DB: Scopus, Science Citation Index Expanded (Web of Science)] [IF: 3.756; AIF: 5.051; Q2 (2020 InCities JCR SCIE)]
2 Makarova, Kira S.; Wolf, Yuri I.; Iranzo, Jaime; Shmakov, Sergey A.; Alkhnbashi, Omer S.; Brouns, Stan J. J.; Charpentier, Emmanuelle; Cheng, David; Haft, Daniel H.; Horvath, Philippe; Moineau, Sylvain; Mojica, Francisco J. M.; Scott, David; Shah, Shiraz A.; Šikšnys, Virginijus; Terns, Michael P.; Venclovas, Česlovas; White, Malcolm F.; Yakunin, Alexander F.; Yan, Winston; Zhang, Feng; Garrett, Roger A.; Backofen, Rolf; van der Oost, John; Barrangou, Rodolphe; Koonin, Eugene V. Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants // Nature reviews microbiology. London : Nature Research. ISSN 1740-1526. eISSN 1740-1534. 2020, vol. 18, p. 67-83. DOI: 10.1038/s41579-019-0299-x. [DB: Scopus, Science Citation Index Expanded (Web of Science)] [IF: 60.633; AIF: 5.079; Q1 (2020 InCities JCR SCIE)]
3 Olechnovič, Kliment; Venclovas, Česlovas. Contact area-based structural analysis of proteins and their complexes using CAD-score // Structural bioinformatics: methods and protocols / ed: Zoltán Gáspári. New York : Springer Science+Business Media, 2020. ISBN 9781071602690. eISBN 9781071602706. p. 75-90. (Methods in molecular biology, ISSN 1064-3745, eISSN 1940-6029 ; vol. 2112). DOI: 10.1007/978-1-0716-0270-6_6. [DB: Book Citation Index - Science (Web of Science), Scopus, SpringerLink]
4 Karvelis, Tautvydas; Bigelytė, Greta; Young, Joshua K; Hou, Zhenglin; Žedaveinytė, Rimantė; Budrė, Karolina; Paulraj, Sushmitha; Djukanovic, Vesna; Gasior, Stephen; Šilanskas, Arūnas; Venclovas, Česlovas; Šikšnys, Virginijus. PAM recognition by miniature CRISPR-Cas12f nucleases triggers programmable double-stranded DNA target cleavage // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2020, vol. 48, iss. 9, p. 5016-5023. DOI: 10.1093/nar/gkaa208. [DB: Scopus, Science Citation Index Expanded (Web of Science)] [IF: 16.971; AIF: 5.817; Q1 (2020 InCities JCR SCIE)]
5 Dapkūnas, Justas; Venclovas, Česlovas. Template-based modeling of protein complexes using the PPI3D web server // Protein structure prediction / ed.: Daisuke Kihara. New York : Humana Press; Springer Science+Business Media, 2020. ISBN 9781071607077. eISBN 9781071607084. p. 139-155. (Methods in molecular biology, ISSN 1064-3745, eISSN 1940-6029 ; vol. 2165). DOI: 10.1007/978-1-0716-0708-4_8. [DB: Book Citation Index - Science (Web of Science), Scopus, SpringerLink]
6 Makarova, Kira S; Timinskas, Albertas; Wolf, Yuri I; Gussow, Ayal B; Šikšnys, Virginijus; Venclovas, Česlovas; Koonin, Eugene V. Evolutionary and functional classification of the CARF domain superfamily, key sensors in prokaryotic antivirus defense // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2020, vol. 48, no. 16, p. 8828-8847. DOI: 10.1093/nar/gkaa635. [DB: Science Citation Index Expanded (Web of Science), Scopus] [IF: 16.971; AIF: 5.817; Q1 (2020 InCities JCR SCIE)]
7 Kazlauskas, Darius; Krupovic, Mart; Guglielmini, Julien; Forterre, Patrick; Venclovas, Česlovas. Diversity and evolution of B-family DNA polymerases // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2020, vol. 48, iss. 18, p. 10142-10156. DOI: 10.1093/nar/gkaa760. [DB: Embase, MEDLINE, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 16.971; AIF: 5.817; Q1 (2020 InCities JCR SCIE)]
8 Gasiunas, Giedrius; Young, Joshua K; Karvelis, Tautvydas; Kazlauskas, Darius; Urbaitis, Tomas; Jasnauskaite, Monika; Grusyte, Mantvyda M; Paulraj, Sushmitha; Wang, Po-Hao; Hou, Zhenglin; Dooley, Shane K; Cigan, Mark; Alarcon, Clara; Chilcoat, N Doane; Bigelytė, Greta; Curcuru, Jennifer L; Mabuchi, Megumu; Sun, Zhiyi; Fuchs, Ryan T; Schildkraut, Ezra; Weigele, Peter R; Jack, William E; Robb, G Brett; Venclovas, Česlovas; Šikšnys, Virginijus. A catalogue of biochemically diverse CRISPR-Cas9 orthologs // Nature communications. London : Nature Publishing Group. eISSN 2041-1723. 2020, vol. 11, no. 1, art. no. 5512, p. [1-10]. DOI: 10.1038/s41467-020-19344-1. [DB: Scopus, Science Citation Index Expanded (Web of Science)]
9 Songailienė, Inga; Juozapaitis, Jonas; Tamulaitienė, Giedrė; Rukšėnaitė, Audronė; Šulčius, Sigitas; Sasnauskas, Giedrius; Venclovas, Česlovas; Šikšnys, Virginijus. HEPN-MNT toxin-antitoxin system: the HEPN ribonuclease is neutralized by OligoAMPylation // Molecular cell. Cambridge, MA : Cell Press. ISSN 1097-2765. eISSN 1097-4164. 2020, vol. 80, p. [1-16]. DOI: 10.1016/j.molcel.2020.11.034. [DB: Science Citation Index Expanded (Web of Science), Scopus] [IF: 17.970; AIF: 6.692; Q1 (2020 InCities JCR SCIE)]

2019
1 Olechnovič, Kliment; Monastyrskyy, Bohdan; Kryshtafovych, Andriy; Venclovas, Česlovas. Comparative analysis of methods for evaluation of protein models against native structures // Bioinformatics. Oxford : Oxford university press. ISSN 1367-4803. eISSN 1460-2059. 2019, vol. 35, iss. 6, p. 937-944. DOI: 10.1093/bioinformatics/bty760. [DB: BIOSIS Previews, Current Contents, Embase, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 5.610; AIF: 3.547; Q1 (2019 InCities JCR SCIE)]
2 Lensink, Marc F; Brysbaert, Guillaume; Nadzirin, Nurul; Velankar, Sameer; Chaleil, Raphaël A G; Gerguri, Tereza; Bates, Paul A; Laine, Elodie; Carbone, Alessandra; Grudinin, Sergei; Kong, Ren; Liu, Ran-Ran; Xu, Xi-Ming; Shi, Hang; Chang, Shan; Eisenstein, Miriam; Karczynska, Agnieszka; Czaplewski, Cezary; Lubecka, Emilia; Lipska, Agnieszka; Krupa, Paweł; Mozolewska, Magdalena; Golon, Łukasz; Samsonov, Sergey; Liwo, Adam; Crivelli, Silvia; Pagès, Guillaume; Karasikov, Mikhail; Kadukova, Maria; Yan, Yumeng; Huang, Sheng-You; Rosell, Mireia; Rodríguez-Lumbreras, Luis A; Romero-Durana, Miguel; Díaz-Bueno, Lucía; Fernandez-Recio, Juan; Christoffer, Charles; Terashi, Genki; Shin, Woong-Hee; Aderinwale, Tunde; Maddhuri Venkata Subraman, Sai Raghavendra; Kihara, Daisuke; Kozakov, Dima; Vajda, Sandor; Porter, Kathryn; Padhorny, Dzmitry; Desta, Israel; Beglov, Dmitri; Ignatov, Mikhail; Kotelnikov, Sergey; Moal, Iain H; Ritchie, David W; Chauvot de Beauchêne, Isaure; Maigret, Bernard; Devignes, Marie-Dominique; Ruiz Echartea, Maria E; Barradas-Bautista, Didier; Cao, Zhen; Cavallo, Luigi; Oliva, Romina; Cao, Yue; Shen, Yang; Baek, Minkyung; Park, Taeyong; Woo, Hyeonuk; Seok, Chaok; Braitbard, Merav; Bitton, Lirane; Scheidman-Duhovny, Dina; Dapkūnas, Justas; Olechnovič, Kliment; Venclovas, Česlovas; Kundrotas, Petras J; Belkin, Saveliy; Chakravarty, Devlina; Badal, Varsha D; Vakser, Ilya A; Vreven, Thom; Vangaveti, Sweta; Borrman, Tyler; Weng, Zhiping; Guest, Johnathan D; Gowthaman, Ragul; Pierce, Brian G; Xu, Xianjin; Duan, Rui; Qiu, Liming; Hou, Jie; Ryan Merideth, Benjamin; Ma, Zhiwei; Cheng, Jianlin; Zou, Xiaoqin; Koukos, Panos I; Roel-Touris, Jorge; Ambrosetti, Francesco; Geng, Cunliang; Schaarschmidt, Jörg; Trellet, Mikael E; Melquiond, Adrien S J; Xue, Li; Jiménez-García, Brian; van Noort, Charlotte W; Honorato, Rodrigo V; Bonvin, Alexandre M J J; Wodak, Shoshana J. Blind prediction of homo- and hetero-protein complexes: the CASP13-CAPRI experiment // Proteins: structure, function, and bioinformatics. Hoboken : Wiley Periodicals, Inc. ISSN 0887-3585. eISSN 1097-0134. 2019, vol. 87, iss. 12, p. 1200-1221. DOI: 10.1002/prot.25838. [DB: MEDLINE, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 2.828; AIF: 4.180; Q2 (2019 InCities JCR SCIE)]
3 Dapkūnas, Justas; Olechnovič, Kliment; Venclovas, Česlovas. Structural modeling of protein complexes: Current capabilities and challenges // Proteins: structure, function and bioinformatics: Special issue: Critical assessment of methods of protein structure prediction. Hoboken : John Wiley and Sons Inc. ISSN 0887-3585. eISSN 1097-0134. 2019, vol. 87, iss. 12, p. 1222-1232. DOI: 10.1002/prot.25774. [DB: Biological Abstracts, Biobase, Current Contents, MEDLINE, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 2.828; AIF: 4.180; Q2 (2019 InCities JCR SCIE)]
4 Cheng, Jianlin; Choe, Myong-Ho; Elofsson, Arne; Han, Kun-Sop; Hou, Jie; Maghrabi, Ali H. A.; McGuffin, Liam J.; Menéndez-Hurtado, David; Olechnovič, Kliment; Schwede, Torsten; Studer, Gabriel; Uziela, Karolis; Venclovas, Česlovas; Wallner, Björn. Estimation of model accuracy in CASP13 // Proteins: structure, function and bioinformatics: Special issue: Critical assessment of methods of protein structure prediction. Hoboken : John Wiley and Sons Inc. ISSN 0887-3585. eISSN 1097-0134. 2019, vol. 87, iss. 12, p. 1361-1377. DOI: 10.1002/prot.25767. [DB: MEDLINE, Science Citation Index Expanded (Web of Science), Scopus] [IF: 2.828; AIF: 4.180; Q2 (2019 InCities JCR SCIE)]
5 Timinskas, Kęstutis; Venclovas, Česlovas. New insights into the structures and interactions of bacterial Y-family DNA polymerases // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2019, vol. 47, no. 9, p. 4383-4405. DOI: 10.1093/nar/gkz198. [DB: Scopus, Science Citation Index Expanded (Web of Science)] [IF: 11.502; AIF: 4.696; Q1 (2019 InCities JCR SCIE)]
6 Venclovas, Česlovas. Genome replication of bacterial and archaeal viruses // Reference module in life sciences : Elsevier Inc., 2019, art. no. 20974. ISBN 9780128096338. p. [1-10]. (Encyclopedia of virology. 4th edition). DOI: 10.1016/B978-0-12-809633-8.20974-6.
7 Olechnovič, Kliment; Venclovas, Česlovas. VoroMQA web server for assessing three-dimensional structures of proteins and protein complexes // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2019, vol. 47, iss. W1, p. W437-W442. DOI: 10.1093/nar/gkz367. [DB: Veterinary Science Database, Embase, BIOSIS Previews, DOAJ, MEDLINE, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 11.502; AIF: 4.696; Q1 (2019 InCities JCR SCIE)]

2018
1 Kazlauskas, Darius; Sezonov, Guennadi; Charpin, Nicole; Venclovas, Česlovas; Forterre, Patrick; Krupovic, Mart. Novel families of archaeo-eukaryotic primases associated with mobile genetic elements of bacteria and archaea // Journal of molecular biology. London : Academic Press Inc Elsevier science. ISSN 0022-2836. eISSN 1089-8638. 2018, Vol. 430, iss. 5, p. 737-750. DOI: 10.1016/j.jmb.2017.11.014. [DB: Scopus, Biological Abstracts, Embase, MEDLINE, Chemical abstracts, BIOSIS Previews, Science Citation Index Expanded (Web of Science)] [IF: 5.067; AIF: 4.417; Q1 (2018 InCities JCR SCIE)]
2 Olechnovič, Kliment; Venclovas, Česlovas. Analysis and assessment of protein 3D structures using interatomic contact areas // Vita Scientia : international conference, 3rd January 2018, Vilnius : conference book. Vilnius : Vita Scientia. ISSN 2538-791X. 2018, p. 6. Prieiga per internetą: <http://www.vitascientia.lt/book> [žiūrėta 2018-04-19].
3 Toliušis, Paulius; Tamulaitienė, Giedrė; Grigaitis, Rokas; Tuminauskaitė, Donata; Šilanskas, Arūnas; Manakova, Elena; Venclovas, Česlovas; Szczelkun, Mark D.; Šikšnys, Virginijus; Zaremba, Mindaugas. The H-subunit of the restriction endonuclease CglI contains a prototype DEAD-Z1 helicase-like motor // Vita Scientia : international conference, 3rd January 2018, Vilnius : conference book. Vilnius : Vita Scientia. ISSN 2538-791X. 2018, p. 51. Prieiga per internetą: <http://eia.libis.lt/item.php?item=vita_scientia:_confe_2018_00_00.pdf&type=date> [žiūrėta 2018-04-27].
4 Kazlauskas, Darius; Krupovic, Mart; Venclovas, Česlovas. Role of viruses in the evolution of eukaryotic B-family DNA polymerases // Viruses of microbes 2018 : EMBO Workshop, 09-13 July 2018, Wrocław, Poland : abstract book. Wrocław : EMBO. 2018, abstract no. 266, p. 244. Prieiga per internetą: <https://wca.wroc.pl/files/dokumenty/10480/KonferencjaVirusesofMicrobesAbstract%20Book%20VoM2018_FIN.pdf> [žiūrėta 2018-12-19].
5 Dapkūnas, Justas; Olechnovič, Kliment; Venclovas, Česlovas. Modeling of protein complexes in CAPRI Round 37 using template-based approach combined with model selection // Proteins: structure, function, and bioinformatics. Hoboken : Wiley Periodicals, Inc. ISSN 0887-3585. eISSN 1097-0134. 2018, vol. 86, iss. S 1, p. 292-301. DOI: 10.1002/prot.25378. [DB: MEDLINE, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 2.501; AIF: 3.989; Q3 (2018 InCities JCR SCIE)]
6 Drabavičius, Gediminas; Šinkūnas, Tomas; Šilanskas, Arūnas; Gasiūnas, Giedrius; Venclovas, Česlovas; Šikšnys, Virginijus. DnaQ exonuclease-like domain of Cas2 promotes spacer integration in a type I-E CRISPR-Cas system // EMBO reports. Hoboken : Wiley-VCH Verlag. ISSN 1469-221X. eISSN 1469-3178. 2018, vol. 19, no 7, art. no. e45543, p. 1709-1712. DOI: 10.15252/embr.201745543. [DB: Scopus, Science Citation Index Expanded (Web of Science)] [IF: 8.383; AIF: 5.202; Q1 (2018 InCities JCR SCIE)]
7 Toliušis, Paulius; Tamulaitienė, Giedrė; Grigaitis, Rokas; Tuminauskaitė, Donata; Šilanskas, Arūnas; Manakova, Elena; Venclovas, Česlovas; Szczelkun, Mark D.; Šikšnys, Virginijus; Zaremba, Mindaugas. The H-subunit of the restriction endonuclease CglI contains a prototype DEAD-Z1 helicase-like motor // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2018, vol. 46, no 5, p. 2560-2572. DOI: 10.1093/nar/gky107. [DB: Scopus, Science Citation Index Expanded (Web of Science)] [IF: 11.147; AIF: 4.417; Q1 (2018 InCities JCR SCIE)]
8 Songailienė, Inga; Juozapaitytė, Ieva; Šinkūnas, Tomas; Juozapaitis, Jonas; Šulčius, S.; Šilanskas, Arūnas; Venclovas, Česlovas; Šikšnys, Virginijus. Melsvabakterių Aphanizomenon flos-aquae CRISPR-Cas sistemos tyrimai // Bioateitis: gamtos ir gyvybės mokslų perspektyvos : 11-oji jaunųjų mokslininkų konferencija, 2018 m. gruodžio 14 d.: pranešimų santraukos. Vilnius : Lietuvos mokslų akademijos leidykla. 2018, p. 12. Prieiga per internetą: <http://www.lma.lt/uploads/2017-12-07_BIOATEITIS_pranesimu_santraukos.pdf> [žiūrėta 2019-09-25].

2017
1 Tamulaitis, Gintautas; Venclovas, Česlovas; Šikšnys, Virginijus. Type III CRISPR-Cas immunity: major differences brushed aside // Trends in microbiology. Oxford : Elsevier Ltd. ISSN 0966-842X. eISSN 1878-4380. 2017, Vol. 25, no 1, p. 49-61. DOI: 10.1016/j.tim.2016.09.012. [DB: Current Contents, BIOSIS Previews, PubMed, Scopus, Biobase, Current Abstracts, Academic Search Premier, Academic Search Complete, CABI Abstracts Databases, Science Citation Index Expanded (Web of Science)] [IF: 11.776; AIF: 4.033; Q1 (2017 InCities JCR SCIE)]
2 Dapkūnas, Justas; Timinskas, Albertas; Olechnovič, Kliment; Margelevičius, Mindaugas; Dičiūnas, Rytis; Venclovas, Česlovas. The PPI3D web server for searching, analyzing and modeling protein-protein interactions in the context of 3D structures // Bioinformatics. Oxford : Oxford University Press. ISSN 1367-4803. eISSN 1460-2059. 2017, Vol. 33, Iss. 6, p. 935-937. DOI: 10.1093/bioinformatics/btw756. [DB: MEDLINE, Chemical abstracts, BIOSIS Previews, Biological Abstracts, Science Citation Index Expanded (Web of Science)] [IF: 5.481; AIF: 3.141; Q1 (2017 InCities JCR SCIE)]
3 Kazlauskienė, Miglė; Kostiuk, Georgij; Venclovas, Česlovas; Tamulaitis, Gintautas; Šikšnys, Virginijus. A cyclic oligonucleotide signaling pathway in type III CRISPR-Cas systems // Science. Washington : American Association for the Advancement of Science. ISSN 0036-8075. eISSN 1095-9203. 2017, Vol. 357, Iss. 6351, p. 605-609. DOI: 10.1126/science.aao0100. [DB: Biobase, Embase, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 41.058; AIF: 5.110; Q1 (2017 InCities JCR SCIE)]
4 Olechnovič, Kliment; Venclovas, Česlovas. VoroMQA: Assessment of protein structure quality using interatomic contact areas. // Proteins: structure, function, and bioinformatics. Hoboken : Wiley Periodicals, Inc. ISSN 0887-3585. eISSN 1097-0134. 2017, Vol. 85, Iss. 6, p. 1131-1145. DOI: 10.1002/prot.25278. [DB: MEDLINE, Current Contents, Biological Abstracts, Biobase, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 2.274; AIF: 3.826; Q3 (2017 InCities JCR SCIE)]
5 Shemesh, Keren; Sebesta, Marek; Pacesa, Martin; Sau, Soumitra; Bronstein, Alex; Parnas, Oren; Liefshitz, Batia; Venclovas, Česlovas; Krejci, Lumir; Kupiec, Martin. A structure-function analysis of the yeast Elg1 protein reveals the importance of PCNA unloading in genome stability maintenance // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2017, Vol. 45, Iss. 6, p. 3189-3203. DOI: 10.1093/nar/gkw1348. [DB: Chemical abstracts, Biobase, Embase, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 11.561; AIF: 4.281; Q1 (2017 InCities JCR SCIE)]
6 Olechnovič, Kliment; Venclovas, Česlovas. Baltymų erdvinės struktūros modelių analizė ir vertinimas naudojant tarpatominių kontaktų plotus // Bioateitis: gamtos ir gyvybės mokslų perspektyvos : 10-oji jaunųjų mokslininkų konferencija, 2017 m. gruodžio 7 d.: pranešimų santraukos. Vilnius : Lietuvos mokslų akademijos leidykla. 2017, p. 19-20. Prieiga per internetą: <http://www.lma.lt/uploads/2017-12-07_BIOATEITIS_pranesimu_santraukos.pdf> [žiūrėta 2018-03-27].
7 Kazlauskienė, Miglė; Kostiuk, Georgij; Venclovas, Česlovas; Tamulaitis, Gintautas; Šikšnys, Virginijus. Ciklinių oligoadenilatų signalinis kelias // Bioateitis: gamtos ir gyvybės mokslų perspektyvos : 10-oji jaunųjų mokslininkų konferencija, 2017 m. gruodžio 7 d.: pranešimų santraukos. Vilnius : Lietuvos mokslų akademijos leidykla. 2017, p. 21. Prieiga per internetą: <http://www.lma.lt/uploads/2017-12-07_BIOATEITIS_pranesimu_santraukos.pdf> [žiūrėta 2018-03-27].

2016
1 Kazlauskienė, Miglė; Tamulaitis, Gintautas; Venclovas, Česlovas; Šikšnys, Virginijus. Programmable RNA and DNA cleavage by a CRISPR-Cas system // Open readings 2016 : 59th scientific conference for students of physics and natural sciences : programme and abstracts. Vilnius : Vilniaus universiteto leidykla. ISSN 2029-4425. 2016, p. 30. Prieiga per internetą: <http://www.openreadings.eu/wp-content/uploads/2016/03/OR2016_abstract_book.pdf> [žiūrėta 2016-10-10].
2 Kazlauskienė, Miglė; Tamulaitis, Gintautas; Kostiuk, Georgij; Venclovas, Česlovas; Šikšnys, Virginijus. Spatiotemporal control of type III-A CRISPR-Cas immunity: coupling DNA degradation with the target RNA recognition // Molecular cell. Cambridge : Cell Press. ISSN 1097-2765. eISSN 1097-4164. 2016, Vol. 62, p. 295-306. DOI: 10.1016/j.molcel.2016.03.024. [DB: Science Citation Index Expanded (Web of Science), Scopus, BIOSIS Previews, Biological Abstracts, MEDLINE, Embase, Chemical abstracts, AIDS and Cancer Research Abstracts] [IF: 14.714; AIF: 4.950; Q1 (2016 InCities JCR SCIE)]
3 Venclovas, Česlovas. Structure of Csm2 elucidates the relationship between small subunits of CRISPR-Cas effector complexes // FEBS Letters. Hoboken : Wiley-Blackwell Publishing Ltd. ISSN 0014-5793. eISSN 1873-3468. 2016, Vol. 590, Iss. 10, p. 1521-1529. DOI: 10.1002/1873-3468.12179. [DB: Science Citation Index Expanded (Web of Science), Scopus, MEDLINE, Embase, Current Contents, BIOSIS Previews, Biological Abstracts, Biobase] [IF: 3.623; AIF: 4.393; Q1 (2016 InCities JCR SCIE)]
4 Kazlauskas, Darius; Krupovic, Mart; Venclovas, Česlovas. The logic of DNA replication in double-stranded DNA viruses: insights from global analysis of viral genomes // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2016, Vol. 44, no 10, p. 4551-4564. DOI: 10.1093/nar/gkw322. [DB: Science Citation Index Expanded (Web of Science), Scopus, Biobase, Chemical abstracts, CABI Abstracts Databases] [IF: 10.162; AIF: 4.207; Q1 (2016 InCities JCR SCIE)]

2015
1 Zilnytė, Milda; Venclovas, Česlovas; Žvirblienė, Aurelija; Plečkaitytė, Milda. The cytolytic activity of vaginolysin strictly depends on cholesterol and Is potentiated by human CD59 // Toxins. Basel : MDPI. ISSN 2072-6651. 2015, vol. 7, iss. 1, p. 110-128. DOI: 10.3390/toxins7010110. [DB: CABI Abstracts Databases, MEDLINE, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 3.571; AIF: 2.892; Q1 (2015 InCities JCR SCIE)]
2 Baranauskė, Simona; Mickutė, Milda; Plotnikova, Aleksandra; Finke, Andreas; Venclovas, Česlovas; Klimašauskas, Saulius; Vilkaitis, Giedrius. Functional mapping of the plant small RNA methyltransferase: HEN1 physically interacts with HYL1 and DICER-LIKE 1 proteins // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2015, Vol. 43, No. 5, p. 2802-2812. DOI: 10.1093/nar/gkv102. [DB: Science Citation Index Expanded (Web of Science), CAB, Scopus, MEDLINE] [IF: 9.202; AIF: 4.093; Q1 (2015 InCities JCR SCIE)]
3 Achar, Yathish Jagadheesh; Balogh, David; Neculai, Dante; Juhasz, Szilvia; Morocz, Monika; Gali, Himabindu; Dhe-Paganon, Sirano; Venclovas, Česlovas; Haracska, Lajos. Human HLTF mediates postreplication repair by its HIRAN domain-dependent replication fork remodelling // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2015, Vol. 43, No. 21, p. 10277-10291. DOI: 10.1093/nar/gkv896. [DB: Embase, BIOSIS Previews, Science Citation Index Expanded (Web of Science), CAB, Current Contents] [IF: 9.202; AIF: 4.093; Q1 (2015 InCities JCR SCIE)]

2014
1 Timinskas, Kęstutis; Balvočiūtė, Monika; Timinskas, Albertas; Venclovas, Česlovas. Comprehensive analysis of DNA polymerase III α subunits and their homologs in bacterial genomes // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. 2014, vol. 42, no 3, 1393-1413. DOI: 10.1093/nar/gkt900. [DB: Science Citation Index Expanded (Web of Science), CAB Abstracts, MEDLINE, VINITI] [IF: 9.112; AIF: 4.149; Q1 (2014 InCities JCR SCIE)]
2 Olechnovič, Kliment; Venclovas, Česlovas. Voronota: a fast and reliable tool for computing the vertices of the Voronoi diagram of atomic balls // Journal of computational chemistry. Hoboken : Wiley-Blackwell. ISSN 0192-8651. 2014, vol. 35, iss. 8, p. 672-681. DOI: 10.1002/jcc.23538. [DB: Scopus, CAS (nenaudotinas), Chemical abstracts, MEDLINE, INSPEC, Science Citation Index Expanded (Web of Science)] [IF: 3.589; AIF: 5.602; Q1 (2014 InCities JCR SCIE)]
3 Olechnovič, Kliment; Venclovas, Česlovas. The use of interatomic contact areas to quantify discrepancies between RNA 3D models and reference structures // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. 2014, vol. 42, issue 9, p. 5407-5415. DOI: 10.1093/nar/gku191. [DB: VINITI, MEDLINE, ProQuest (nenaudotinas), Elsevier (nenaudotinas), Ebsco (nenaudotinas), CSA (nenaudotinas), CAB Abstracts, Science Citation Index Expanded (Web of Science)] [IF: 9.112; AIF: 4.149; Q1 (2014 InCities JCR SCIE)]
4 Olechnovič, Kliment; Venclovas, Česlovas. The CAD-score web server: contact area-based comparison of structures and interfaces of proteins, nucleic acids and their complexes // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. 2014, vol. 42, issue W1, p. W259-W263. DOI: 10.1093/nar/gku294. [DB: VINITI, MEDLINE, ProQuest (nenaudotinas), Elsevier (nenaudotinas), Ebsco (nenaudotinas), CSA (nenaudotinas), CAB Abstracts, Science Citation Index Expanded (Web of Science)] [IF: 9.112; AIF: 4.149; Q1 (2014 InCities JCR SCIE)]
5 Tamulaitis, Gintautas; Kazlauskienė, Miglė; Manakova, Elena; Venclovas, Česlovas; Nwokeoji, Alison O.; Dickman, Mark J.; Horvath, Philippe; Šikšnys, Virginijus. Programmable RNA Shredding by the Type III-A CRISPR-Cas System of Streptococcus thermophilus // Molecular cell. Cambridge : Cell Press. ISSN 1097-2765. eISSN 1097-4164. 2014, Vol. 56, Iss. 4, p. 506-517. DOI: 10.1016/j.molcel.2014.09.027. [DB: Science Citation Index Expanded (Web of Science), BIOSIS Previews, Biological Abstracts, Current Contents, Scopus] [IF: 14.018; AIF: 4.964; Q1 (2014 InCities JCR SCIE)]
6 Kazlauskas, Darius; Venclovas, Česlovas. Viral DNA replication: new insights and discoveries from large scale computational analysis // 50th anniversary of FEBS : Abstracts book of The XIIIth International Conference of Lithuanian Biochemical Society, June 18-20, 2014. Vilnius. 2014, p. 13. Prieiga per internetą: <http://www.elib.grsu.by/katalog/481236pdf.pdf?d=true> [žiūrėta 2016-05-16].
7 Dapkūnas, Justas; Timinskas, Albertas; Olechnovič, Kliment; Margelevičius, Mindaugas; Dičiūnas, Rytis; Venclovas, Česlovas. The PPI3D web server for searching, analyzing and modeling protein-protein interactions in the context of 3D structures // 50th anniversary of FEBS : Abstracts book of The XIIIth International Conference of Lithuanian Biochemical Society, June 18-20, 2014. Vilnius. 2014, p. 17. Prieiga per internetą: <http://www.elib.grsu.by/katalog/481236pdf.pdf?d=true> [žiūrėta 2016-05-16].
8 Kazlauskienė, Miglė; Tamulaitis, Gintautas; Manakova, Elena; Venclovas, Česlovas; Nwokeoji, Alison O.; Dickman, Mark J.; Horvath, Philippe; Šikšnys, Virginijus. Characterization of Streptococcus thermophilus Csm complex mediated CRISPR interference in vitro // 50th anniversary of FEBS : Abstracts book of The XIIIth International Conference of Lithuanian Biochemical Society, June 18-20, 2014. Vilnius. 2014, p. 19-20. Prieiga per internetą: <http://www.elib.grsu.by/katalog/481236pdf.pdf?d=true> [žiūrėta 2016-04-25].
9 Timinskas, Kęstutis; Balvočiūtė, Monika; Timinskas, Albertas; Venclovas, Česlovas. Comprehensive analysis of DNA polymerase III α subunits and their homologs in bacterial genomes // 50th anniversary of FEBS : Abstracts book of The XIIIth International Conference of Lithuanian Biochemical Society, June 18-20, 2014. Vilnius. 2014, p. 45-46. Prieiga per internetą: <http://www.elib.grsu.by/katalog/481236pdf.pdf?d=true> [žiūrėta 2016-05-12].
10 Tamulaitis, Gintautas; Kazlauskienė, Miglė; Manakova, Elena; Venclovas, Česlovas; Nwokeoji, Alison O.; Dickman, Mark J.; Horvath, Philippe; Šikšnys, Virginijus. Characterization of Streptococcus thermophilus Csm complex mediated CRISPR interference in vitro // The FEBS journal. Oxford : Wiley-Blackwell Publishing Ltd. ISSN 1742-464X. 2014, Vol. 281, suppl. 1, p. 678. DOI: 10.1111/febs.12919. [DB: Chemical abstracts, Index Medicus, Current Awareness in Biological Sciences, AgBiotech News and Information, Science Citation Index Expanded (Web of Science)] [IF: 4.001; AIF: 4.149; Q2 (2014 InCities JCR SCIE)]
11 Jotautis, Vaidas; Marandykina, Alina; Kairys, Visvaldas; Venclovas, Česlovas; Skeberdis, Vytenis Arvydas. New Insights Into Investigation of Chemical Gating of Connexin 36 by Altering Cysteine Residues // XIIIth International Conference of Lithuanian Biochemical Society "50th anniversary of FEBS" : June 18-20, 2014 ; Symposium "Young biochemistry" : June 17, 2014, Birštonas, Lithuania : Abstracts book of The XIIIth International Conference of Lithuanian Biochemical Society / Organizers: Lietuvos biochemikų draugija / Lithuanian Biochemical Society. Birštonas : Lietuvos biochemikų draugija. 2014, p. 24, no. p.p.5.
12 Rimkutė, Lina; Marandykina, Alina; Palacios-Prado, Nicolás; Jotautis, Vaidas; Milašiūtė, Gintarė; Venclovas, Česlovas; Bukauskas, Feliksas F; Skeberdis, Vytenis Arvydas. Modulation of Cx36 gap junction conductance by intracellular pH and Mg2+ // XIIIth International Conference of Lithuanian Biochemical Society "50th anniversary of FEBS" : June 18-20, 2014 ; Symposium "Young biochemistry" : June 17, 2014, Birštonas, Lithuania : Abstracts book of The XIIIth International Conference of Lithuanian Biochemical Society / Organizers: Lietuvos biochemikų draugija / Lithuanian Biochemical Society. Birštonas : Lietuvos biochemikų draugija. 2014, p. 44, no. p.p.58.
13 Kazlauskas, Darius; Venclovas, Česlovas. Herpesviral helicase-primase subunit UL8 is inactivated B-family polymerase // Bioinformatics. Oxford : Oxford University Press. ISSN 1367-4803. 2014, vol 30, no 15, p. 2093-2097. DOI: 10.1093/bioinformatics/btu204. [DB: Embase, Biological Abstracts, MEDLINE, Current Contents / Life Sciences, Chemical abstracts, CAB Abstracts, BIOSIS Previews, Science Citation Index Expanded (Web of Science)] [IF: 4.981; AIF: 3.089; Q1 (2014 InCities JCR SCIE)]
14 Fang, Jing; Nevin, Philip; Kairys, Visvaldas; Venclovas, Česlovas; Engen, John R.; Beuning, Penny J. Conformational analysis of processivity clamps in solution demonstrates that tertiary structure does not correlate with protein dynamics // Structure. Cambridge, MA : Cell Press. ISSN 0969-2126. 2014, vol. 22, iss. 4, p. 572-581. DOI: 10.1016/j.str.2014.02.001. [DB: Embase, MEDLINE, ProQuest (nenaudotinas), GeoRef, Scopus, EBSCOHost (nenaudotinas), ISI Web of Science (nenaudotinas)] [IF: 5.618; AIF: 4.396; Q1 (2014 InCities JCR SCIE)]

2013
1 Gopinath, Krishnamoorthy; Venclovas, Česlovas; Ioerger, Thomas R.; Sacchettini, James C.; McKinney, John D.; Mizrahi, Valerie; Warner, Digby F. A vitamin B12 transporter in Mycobacterium tuberculosis // Open biology [Elektroninis išteklius]. London : The Royal Society Publishing. ISSN 2046-2441. 2013, Vol. 3, no. 2, Art. no. 120175. DOI: 10.1098/rsob.120175. [DB: Biological Abstracts, PubMed, Science Citation Index Expanded (Web of Science)] [IF: 4.556; AIF: 4.311; Q1 (2013 InCities JCR SCIE)]
2 Venclovas, Česlovas; Olechnovič, Kliment. The use of interatomic contact areas for the assessment of RNA 3D structural models // The FEBS Journal. Oxford : Wiley-Blackwell Publishing Ltd. ISSN 1742-464X. 2013, vol. 280, suppl. 1, p. 546-547. Prieiga per internetą: <http://onlinelibrary.wiley.com/doi/10.1111/febs.12340/pdf> [žiūrėta 2013-11-06]. [DB: Chemical abstracts, Index Medicus, Current Awareness in Biological Sciences, AgBiotech News and Information, Science Citation Index Expanded (Web of Science)] [IF: 3.986; AIF: 4.311; Q2 (2013 InCities JCR SCIE)]
3 Olechnovič, Kliment; Kulberkytė, Eleonora; Venclovas, Česlovas. CAD-score:a new contact area difference-based function for evaluation of protein structural models // Proteins: structure, function, and bioinformatics. Hoboken : John Wiley & Sons, Inc. ISSN 0887-3585. 2013, vol. 81, no 1, p. 149-162. DOI: 10.1002/prot.24172. [DB: Embase, Biological Abstracts, Scopus, Elsevier Biobase, BIOSIS Previews, Science Citation Index Expanded (Web of Science)] [IF: 2.921; AIF: 3.800; Q2 (2013 InCities JCR SCIE)]

2012
1 Kazlauskas, Darius; Venclovas, Česlovas. Two distinct SSB protein families in nucleo-cytoplasmic large DNA viruses // Bioinformatics. Oxford : Oxford University Press. ISSN 1367-4803. 2012, Vol. 28, no. 24, p. 3186-3190. DOI: 10.1093/bioinformatics/bts626. [DB: Embase, Biological Abstracts, MEDLINE, Current Contents / Life Sciences, Chemical abstracts, CAB Abstracts, BIOSIS Previews, Science Citation Index Expanded (Web of Science)] [IF: 5.323; AIF: 3.187; Q1 (2012 InCities JCR SCIE)]
2 Nagirnaja, Liina; Venclovas, Česlovas; Rull, Kristiina; Jonas, Kim C.; Peltoketo, Hellevi; Christiansen, Ole B.; Kairys, Visvaldas; Kivi, Gaily; Steffensen, Rudi; Huhtaniemi, Ilpo T.; Laan, Maris. Structural and functional analysis of rare missense mutations in human chorionic gonadotrophin β-subunit // Molecular human reproduction. Oxford : Oxford University Press. ISSN 1460-2407. 2012, Vol. 18, no. 8, p. 379-390. DOI: 10.1093/molehr/gas018. [DB: Science Citation Index Expanded (Web of Science), VINITI, Current Contents / Life Sciences, BIOSIS Previews, Embase]
3 Venclovas, Česlovas. Methods for sequence-structure alignment // Homology modeling: methods and protocols / eds.: Andrew J.W. Orry, Ruben Abagyan. - Series: Methods in molecular biology, Vol. 857. ISSN 1064-3745. New York : Humana Press, Inc, 2012. ISBN 9781617795879. p. 55-82. (Methods in Molecular Biology ; vol. 857). DOI: 10.1007/978-1-61779-588-6_3. [DB: Scopus, ScienceDirect, MEDLINE, Embase]

2011
1 Barsky, Daniel; Laurence, Ted A.; Venclovas, Česlovas. How proteins slide on DNA // Biophysics of DNA-protein interactions: from single molecules to biological systems / Editors : Williams, Mark C.; Maher, III, L. James. New York : Springer, 2011. ISBN 9780387928074. p. 39-68. DOI: 10.1007/978-0-387-92808-1_3.
2 Laganeckas, Mindaugas; Margelevičius, Mindaugas; Venclovas, Česlovas. Identification of new homologs of PD-(D/E)XK nucleases by support vector machines trained on data derived from profile–profile alignments // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. 2011, vol. 39, no. 4, p. 1187-1196. DOI: 10.1093/nar/gkq958. [DB: Biological Abstracts, BIOSIS Previews, Current Contents / Life Sciences, MEDLINE, Science Citation Index Expanded (Web of Science)] [IF: 8.026; AIF: 4.273; Q1 (2011 InCities JCR SCIE)]
3 Timinskas, Kęstutis; Venclovas, Česlovas. The N-terminal region of the bacterial DNA polymerase PolC features a pair of domains, both distantly related to domain V of the DNA polymerase III τ subunit // The FEBS Journal. Oxford : Wiley-Blackwell Publishing Ltd. ISSN 1742-464X. 2011, vol. 278, no. 17, p. 3109-3118. DOI: 10.1111/j.1742-4658.2011.08236.x. [DB: Chemical abstracts, Index Medicus, Current Awareness in Biological Sciences, AgBiotech News and Information, Science Citation Index Expanded (Web of Science)] [IF: 3.790; AIF: 4.273; Q2 (2011 InCities JCR SCIE)]
4 Kazlauskas, Darius; Venclovas, Česlovas. Computational analysis of DNA replicases in double-stranded DNA viruses: relationship with the genome size // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. 2011, vol. 39, no. 19, p. 8291-8305. DOI: 10.1093/nar/gkr564. [DB: Biological Abstracts, MEDLINE, Science Citation Index Expanded (Web of Science)] [IF: 8.026; AIF: 4.273; Q1 (2011 InCities JCR SCIE)]
5 Olechnovič, Kliment; Margelevičius, Mindaugas; Venclovas, Česlovas. Voroprot: an interactive tool for the analysis and visualization of complex geometric features of protein structure // Bioinformatics. Oxford : Oxford University Press. ISSN 1367-4803. 2011, Vol. 27, no. 5, p. 723-724. DOI: 10.1093/bioinformatics/btq720. [DB: Embase, Biological Abstracts, MEDLINE, Current Contents / Life Sciences, Chemical abstracts, CAB Abstracts, BIOSIS Previews, Science Citation Index Expanded (Web of Science)] [IF: 5.468; AIF: 3.196; Q1 (2011 InCities JCR SCIE)]